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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.VolumeDataReader
org.jmol.jvxl.readers.AtomDataReader
org.jmol.jvxl.readers.AtomPropertyMapper
class AtomPropertyMapper
Field Summary | |
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private int |
calcType
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private boolean |
doSmoothProperty
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private AtomIndexIterator |
iter
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private MepCalculationInterface |
m
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private java.lang.String |
mepType
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private float |
smoothingPower
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Fields inherited from class org.jmol.jvxl.readers.AtomDataReader |
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atomCount, atomData, atomDataServer, atomIndex, atomNo, atomProp, atomRadius, atomXyz, bsMyIgnored, bsMySelected, bsNearby, doAddHydrogens, doUseIterator, doUsePlane, fileDotModel, fileName, firstNearbyAtom, maxDistance, modelIndex, myAtomCount, myIndex, nearbyAtomCount |
Fields inherited from class org.jmol.jvxl.readers.VolumeDataReader |
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allowMapData, dataType, point, precalculateVoxelData |
Constructor Summary | |
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AtomPropertyMapper(SurfaceGenerator sg,
java.lang.String mepType)
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Method Summary | |
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protected void |
finalizeMapping()
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protected void |
generateCube()
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float |
getValueAtPoint(javax.vecmath.Point3f pt)
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protected void |
initializeMapping()
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protected void |
setup()
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Methods inherited from class org.jmol.jvxl.readers.AtomDataReader |
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fixTitleLine, getAtoms, setHeader, setRangesAndAddAtoms |
Methods inherited from class org.jmol.jvxl.readers.VolumeDataReader |
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closeReader, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelDataIndividually, setVoxelRange |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private MepCalculationInterface m
private java.lang.String mepType
private int calcType
private boolean doSmoothProperty
private AtomIndexIterator iter
private float smoothingPower
Constructor Detail |
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AtomPropertyMapper(SurfaceGenerator sg, java.lang.String mepType)
Method Detail |
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protected void setup()
setup
in class AtomDataReader
protected void initializeMapping()
initializeMapping
in class SurfaceReader
protected void finalizeMapping()
finalizeMapping
in class SurfaceReader
protected void generateCube()
generateCube
in class VolumeDataReader
public float getValueAtPoint(javax.vecmath.Point3f pt)
getValueAtPoint
in class SurfaceReader
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