org.jmol.adapter.readers.xml
Class XmlVaspReader
java.lang.Object
org.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.xml.XmlReader
org.jmol.adapter.readers.xml.XmlVaspReader
public class XmlVaspReader
- extends XmlReader
Vasp vasprun.xml reader
- Author:
- hansonr
Field Summary |
(package private) float |
a
|
(package private) float |
alpha
|
(package private) int |
atomCount
|
(package private) java.lang.String |
atomName
|
(package private) java.lang.String[] |
atomNames
|
(package private) java.lang.String |
atomSym
|
(package private) java.lang.String[] |
atomSyms
|
(package private) float |
b
|
(package private) float |
beta
|
(package private) float |
c
|
(package private) java.lang.StringBuffer |
data
|
(package private) float |
gamma
|
(package private) boolean |
haveUnitCell
|
(package private) int |
iAtom
|
(package private) boolean |
modelRead
|
(package private) java.lang.String |
name
|
(package private) boolean |
readThisModel
|
(package private) java.lang.String[] |
vaspImplementedAttributes
|
Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addVibrations, ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, continuing, desiredModelNumber, desiredVibrationNumber, doApplySymmetry, doCheckUnitCell, doProcessLines, filter, getHeader, haveModel, havePartialChargeFilter, htParams, ignoreFileSpaceGroupName, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveSymmetryOperators, iHaveUnitCell, isSequential, isTrajectory, latticeCells, line, matUnitCellOrientation, modelNumber, next, notionalUnitCell, os, prevline, ptLine, reader, readerName, readMolecularOrbitals, spaceGroup, symmetry, templateAtomCount, vibrationNumber, viewer |
Method Summary |
void |
processEndElement(java.lang.String uri,
java.lang.String localName,
java.lang.String qName)
|
void |
processStartElement(java.lang.String namespaceURI,
java.lang.String localName,
java.lang.String qName,
java.util.HashMap atts)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
netscape.javascript.JSObject DOMNode)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
org.xml.sax.XMLReader xmlReader)
|
Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addJmolScript, addPrimitiveLatticeVector, addSites, addSiteScript, applySymmetryAndSetTrajectory, checkFilter, checkLastModel, checkLine, checkLineForScript, checkLineForScript, clearLatticeParameters, cloneLastAtomSet, createSpaceGroup, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, doGetVibration, fillDataBlock, fillDataBlock, fillFloatArray, fillFrequencyData, filterAtom, finalizeReader, getElementSymbol, getFortranFormatLengths, getStrings, getSymmetry, getTokens, getTokens, getTokens, getTokensFloat, initializeSymmetry, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseStringInfestedFloatArray, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readData, readLine, set2D, setAtomCoord, setAtomCoord, setFilter, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
vaspImplementedAttributes
java.lang.String[] vaspImplementedAttributes
data
java.lang.StringBuffer data
name
java.lang.String name
atomCount
int atomCount
iAtom
int iAtom
modelRead
boolean modelRead
readThisModel
boolean readThisModel
haveUnitCell
boolean haveUnitCell
atomNames
java.lang.String[] atomNames
atomSyms
java.lang.String[] atomSyms
atomName
java.lang.String atomName
atomSym
java.lang.String atomSym
a
float a
b
float b
c
float c
alpha
float alpha
beta
float beta
gamma
float gamma
XmlVaspReader
XmlVaspReader()
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
org.xml.sax.XMLReader xmlReader)
- Overrides:
processXml
in class XmlReader
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
netscape.javascript.JSObject DOMNode)
- Overrides:
processXml
in class XmlReader
processStartElement
public void processStartElement(java.lang.String namespaceURI,
java.lang.String localName,
java.lang.String qName,
java.util.HashMap atts)
- Overrides:
processStartElement
in class XmlReader
processEndElement
public void processEndElement(java.lang.String uri,
java.lang.String localName,
java.lang.String qName)
- Overrides:
processEndElement
in class XmlReader