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LCElutionPeak Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.h>

Public Member Functions

 ~LCElutionPeak ()
 
 LCElutionPeak ()
 
 LCElutionPeak (MZ_series_ITERATOR, double)
 
 LCElutionPeak (const LCElutionPeak &)
 
 LCElutionPeak (const LCElutionPeak *)
 
void analyzeLCElutionPeak ()
 
void setSNIntensityThreshold ()
 
void computeLCElutionPeakParameters ()
 
double compute_delta_area (double, double, double, double)
 
void remove_background_peak ()
 
void compute_CHRG ()
 
void defineLCElutionPeakParametersFromMSPeak ()
 
void createConsensIsotopPattern ()
 
void print_profile (std::ofstream *)
 
MSPeakfind_true_peak (float)
 
void show_info ()
 
LCElutionPeakoperator= (const LCElutionPeak &)
 
LCElutionPeakoperator<= (const LCElutionPeak &)
 
LCElutionPeakoperator>= (const LCElutionPeak &)
 
LCElutionPeakoperator< (const LCElutionPeak &)
 
LCElutionPeakoperator> (const LCElutionPeak &)
 
void setElutionPeakExtraInfo (std::string in)
 
std::string getElutionPeakExtraInfo ()
 
SIGNAL_iterator get_signal_list_start ()
 
SIGNAL_iterator get_signal_list_end ()
 
void set_apex_retention_time (double in)
 
void update_CHRGMAP (MSPeak *in)
 
int get_scan_apex ()
 
double get_apex_intensity ()
 
double get_apex_retention_time ()
 
double get_apex_MZ ()
 
float get_intensity (int in)
 
double get_MZ (int)
 
double get_total_peak_area ()
 
int get_start_scan ()
 
int get_end_scan ()
 
void set_start_retention_time (double in)
 
double get_start_retention_time ()
 
void set_end_retention_time (double in)
 
double get_end_retention_time ()
 
int get_nb_ms_peaks ()
 
int get_charge_state ()
 
double getSignalToNoise ()
 
double getSignalToNoiseBackground ()
 

Static Public Attributes

static double DEBUG_MASS_START
 
static double DEBUG_MASS_END
 

Protected Attributes

double fMonoMass
 
double fVolume
 
int fCharge
 
int fScanNumberStart
 
int fScanNumberApex
 
int fScanNumberEnd
 
double fapex_intensity
 
double fRT
 
double fStartTR
 
double fEndTR
 
double fpeak_area
 
double fSignalToNoise
 
double fSNIntensityThreshold
 
MSPeakAPEX
 
std::string elutionPeakExtraInfo
 
std::multimap< int, MSPeakintens_signals
 
std::multimap< int, int > CHRG_MAP
 

Private Attributes

ConsensusIsotopePatternisotopePattern
 
int fNrIsotopes
 
double f_observed_Mass
 
double fIsotopMass
 

Constructor & Destructor Documentation

Member Function Documentation

void analyzeLCElutionPeak ( )
void compute_CHRG ( )
double compute_delta_area ( double  ,
double  ,
double  ,
double   
)
void computeLCElutionPeakParameters ( )
void createConsensIsotopPattern ( )
void defineLCElutionPeakParametersFromMSPeak ( )
MSPeak* find_true_peak ( float  )
double get_apex_intensity ( )
double get_apex_MZ ( )
double get_apex_retention_time ( )
int get_charge_state ( )
double get_end_retention_time ( )
int get_end_scan ( )
float get_intensity ( int  in)
double get_MZ ( int  )
int get_nb_ms_peaks ( )
int get_scan_apex ( )
SIGNAL_iterator get_signal_list_end ( )
SIGNAL_iterator get_signal_list_start ( )
double get_start_retention_time ( )
int get_start_scan ( )
double get_total_peak_area ( )
std::string getElutionPeakExtraInfo ( )
double getSignalToNoise ( )
double getSignalToNoiseBackground ( )
LCElutionPeak& operator< ( const LCElutionPeak )
LCElutionPeak& operator<= ( const LCElutionPeak )
LCElutionPeak& operator= ( const LCElutionPeak )
LCElutionPeak& operator> ( const LCElutionPeak )
LCElutionPeak& operator>= ( const LCElutionPeak )
void print_profile ( std::ofstream *  )
void remove_background_peak ( )
void set_apex_retention_time ( double  in)
void set_end_retention_time ( double  in)
void set_start_retention_time ( double  in)
void setElutionPeakExtraInfo ( std::string  in)
void setSNIntensityThreshold ( )
void show_info ( )
void update_CHRGMAP ( MSPeak in)

Member Data Documentation

MSPeak* APEX
protected
std::multimap<int, int> CHRG_MAP
protected
double DEBUG_MASS_END
static
double DEBUG_MASS_START
static
std::string elutionPeakExtraInfo
protected
double f_observed_Mass
private
double fapex_intensity
protected
int fCharge
protected
double fEndTR
protected
double fIsotopMass
private
double fMonoMass
protected
int fNrIsotopes
private
double fpeak_area
protected
double fRT
protected
int fScanNumberApex
protected
int fScanNumberEnd
protected
int fScanNumberStart
protected
double fSignalToNoise
protected
double fSNIntensityThreshold
protected
double fStartTR
protected
double fVolume
protected
std::multimap<int, MSPeak> intens_signals
protected
ConsensusIsotopePattern* isotopePattern
private

OpenMS / TOPP release 2.0.0 Documentation generated on Sat May 16 2015 16:13:54 using doxygen 1.8.9.1