This is the complete list of members for PILISIdentification, including all inherited members.
aa_weight_ | PILISIdentification | protected |
check_defaults_ | DefaultParamHandler | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
getDefaults() const | DefaultParamHandler | |
getFinalIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const PeptideIdentification &pre_id) | PILISIdentification | protected |
getIdentification(const std::map< String, UInt > &candidates, PeptideIdentification &id, const RichPeakSpectrum &spectrum) | PILISIdentification | |
getIdentifications(const std::vector< std::map< String, UInt > > &candidates, std::vector< PeptideIdentification > &ids, const RichPeakMap &exp) | PILISIdentification | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getPILISModel_() | PILISIdentification | protected |
getPreIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const std::map< String, UInt > &cand_peptides) | PILISIdentification | protected |
getSpectrum_(RichPeakSpectrum &spec, const String &sequence, int charge) | PILISIdentification | protected |
getSubsections() const | DefaultParamHandler | |
hmm_model_ | PILISIdentification | protected |
operator=(const PILISIdentification &source) | PILISIdentification | |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
own_model_ | PILISIdentification | protected |
own_sequence_db_ | PILISIdentification | protected |
p_ | PILISIdentification | protected |
param_ | DefaultParamHandler | protected |
PILISIdentification() | PILISIdentification | |
PILISIdentification(const PILISIdentification &source) | PILISIdentification | |
pre_scorer_ | PILISIdentification | protected |
scorer_ | PILISIdentification | protected |
setModel(PILISModel *hmm_model) | PILISIdentification | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
sim_specs_ | PILISIdentification | protected |
subsections_ | DefaultParamHandler | protected |
updateMembers_() | PILISIdentification | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PILISIdentification() | PILISIdentification | virtual |