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PenaltyFactors Struct Reference

Class for the penalty factors used during the optimization. More...

#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h>

Inheritance diagram for PenaltyFactors:
PenaltyFactorsIntensity

Public Member Functions

 PenaltyFactors ()
 
 PenaltyFactors (const PenaltyFactors &p)
 
PenaltyFactorsoperator= (const PenaltyFactors &p)
 
 ~PenaltyFactors ()
 

Public Attributes

double pos
 Penalty factor for the peak shape's position. More...
 
double lWidth
 Penalty factor for the peak shape's left width parameter. More...
 
double rWidth
 Penalty factor for the peak shape's right width parameter. More...
 

Detailed Description

Class for the penalty factors used during the optimization.

A great deviation (squared deviation) of a peak shape's position or its left or right width parameter can be penalised. In each iteration the penalty (for each peak shape) is computed by: penalty = penalty_pos * pow(p_position - old_position, 2) + penalty_lwidth * pow(p_width_l - old_width_l, 2) + penalty_rwidth * pow(p_width_r - old_width_r, 2);

Constructor & Destructor Documentation

PenaltyFactors ( )
inline
PenaltyFactors ( const PenaltyFactors p)
inline
~PenaltyFactors ( )
inline

Member Function Documentation

PenaltyFactors& operator= ( const PenaltyFactors p)
inline

Member Data Documentation

double lWidth
double pos
double rWidth

OpenMS / TOPP release 2.0.0 Documentation generated on Sat May 16 2015 16:14:14 using doxygen 1.8.9.1