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MapAlignmentTransformer.h
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31 // $Maintainer: Stephan Aiche $
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34 
35 
36 #ifndef OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTTRANSFORMER_H
37 #define OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTTRANSFORMER_H
38 
39 #include <vector>
40 #include <OpenMS/config.h>
41 
44 
45 namespace OpenMS
46 {
47 
48  class TransformationDescription;
49  class ConsensusMap;
50  class PeptideIdentification;
51  class ConsensusFeature;
52 
56  class OPENMS_DLLAPI MapAlignmentTransformer
57  {
58 
59 public:
61  static void transformPeakMaps(std::vector<MSExperiment<> > & maps, const std::vector<TransformationDescription> & given_trafos);
62 
64  static void transformFeatureMaps(std::vector<FeatureMap > & maps, const std::vector<TransformationDescription> & given_trafos);
65 
67  static void transformConsensusMaps(std::vector<ConsensusMap> & maps, const std::vector<TransformationDescription> & given_trafos);
68 
70  static void transformPeptideIdentifications(std::vector<std::vector<PeptideIdentification> > & maps, const std::vector<TransformationDescription> & given_trafos);
71 
72 
74  static void transformSinglePeakMap(MSExperiment<> & msexp, const TransformationDescription & trafo);
75 
77  static void transformSingleFeatureMap(FeatureMap & fmap, const TransformationDescription & trafo);
78 
80  static void transformSingleConsensusMap(ConsensusMap & cmap, const TransformationDescription & trafo);
81 
83  static void transformSinglePeptideIdentification(std::vector<PeptideIdentification> & pepids, const TransformationDescription & trafo);
84 
85 private:
86 
88  static void applyToFeature_(Feature & feature, const TransformationDescription & trafo);
89 
91  static void applyToBaseFeature_(BaseFeature & feature, const TransformationDescription & trafo);
92 
94  static void applyToConsensusFeature_(ConsensusFeature & feature, const TransformationDescription & trafo);
95 
96  };
97 } // namespace OpenMS
98 
99 #endif // OPENMS_ANALYSIS_MAPMATCHING_MAPALIGNMENTTRANSFORMER_H
The MapAlignmentTransformer class.
Definition: MapAlignmentTransformer.h:56
A container for features.
Definition: FeatureMap.h:93
A container for consensus elements.
Definition: ConsensusMap.h:72
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
A basic LC-MS feature.
Definition: BaseFeature.h:56
An LC-MS feature.
Definition: Feature.h:70
Generic description of a coordinate transformation.
Definition: TransformationDescription.h:58
A 2-dimensional consensus feature.
Definition: ConsensusFeature.h:65

OpenMS / TOPP release 2.0.0 Documentation generated on Sat May 16 2015 16:13:23 using doxygen 1.8.9.1