Filters MS2 spectra based on XIC intensities in control and treatment. Used in RNPxl experiments to reduce candidate spectra.
potential predecessor tools | ![]() ![]() | potential successor tools |
TOPP_PeakPickerHires | RNPxl |
The command line parameters of this tool are:
RNPxlXICFilter -- Remove MS2 spectra from treatment based on the fold change between control and treatment. Version: 2.0.0 May 16 2015, 09:22:21, Revision: GIT-NOTFOUND Usage: RNPxlXICFilter <options> Options (mandatory options marked with '*'): -control <file>* Input mzML file (valid formats: 'mzML') -treatment <file>* Input mzML file (valid formats: 'mzML') -fold_change Fold change between XICs (default: '2') -rt_tol RT tolerance in [s] for finding max peak (whole RT range around RT middle) (default: '20') -mz_tol M/z tolerance in [ppm] for finding a peak (default: '10') -out <file>* Output of the treatment file after XIC filtering. (valid formats: 'mzML') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Sat May 16 2015 16:13:42 using doxygen 1.8.9.1 |