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IDFilter Member List

This is the complete list of members for IDFilter, including all inherited members.

filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false)IDFilterstatic
filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification)IDFilterinlinestatic
filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n)IDFilterinlinestatic
filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification)IDFilterinlinestatic
filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification)IDFilterstatic
filterIdentificationsByDecoy(const IdentificationType &identification, IdentificationType &filtered_identification)IDFilterinlinestatic
filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, bool ignore_modifications, PeptideIdentification &filtered_identification)IDFilterstatic
filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX)IDFilterstatic
filterIdentificationsByMetaValueRange(const PeptideIdentification &identification, const String &key, double low, double high, bool missing=false)IDFilterstatic
filterIdentificationsByMZ(const std::vector< PeptideIdentification > &identifications, double min_mz, double max_mz, std::vector< PeptideIdentification > &filtered_identifications)IDFilterstatic
filterIdentificationsByMzError(const PeptideIdentification &identification, double mass_error, bool unit_ppm, PeptideIdentification &filtered_identification)IDFilterstatic
filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false)IDFilterstatic
filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification)IDFilterstatic
filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins)IDFilterinlinestatic
filterIdentificationsByRT(const std::vector< PeptideIdentification > &identifications, double min_rt, double max_rt, std::vector< PeptideIdentification > &filtered_identifications)IDFilterstatic
filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05)IDFilterstatic
filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05)IDFilterstatic
filterIdentificationsByScore(const IdentificationType &identification, double threshold_score, IdentificationType &filtered_identification)IDFilterinlinestatic
filterIdentificationsByScores(MSExperiment< PeakT > &experiment, double peptide_threshold_score, double protein_threshold_score)IDFilterinlinestatic
filterIdentificationsByThreshold(const IdentificationType &identification, double threshold_fraction, IdentificationType &filtered_identification)IDFilterinlinestatic
filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, double peptide_threshold_fraction, double protein_threshold_fraction)IDFilterinlinestatic
filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification)IDFilterstatic
filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification)IDFilterstatic
getBestHit(const std::vector< IdentificationType > identifications, bool assume_sorted, PeptideHit &best_hit)IDFilterinlinestatic
IDFilter()IDFilter
removeUnreferencedPeptideHits(const ProteinIdentification &identification, std::vector< PeptideIdentification > &peptide_identifications, bool delete_unreferenced_peptide_hits=false)IDFilterstatic
removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &filtered_identification)IDFilterstatic
updateProteinGroups(const std::vector< ProteinIdentification::ProteinGroup > &groups, const std::vector< ProteinHit > &hits, std::vector< ProteinIdentification::ProteinGroup > &filtered_groups)IDFilterstatic
~IDFilter()IDFiltervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Sat May 16 2015 16:13:52 using doxygen 1.8.9.1