Extract extended statistics on the features of a map for quality control.
pot. predecessor tools | ![]() ![]() | pot. successor tools |
FeatureFinder, FeatureMatcher | - |
This tool computes some basic statistics on the features of a map that are frequently used for quality control. In contrast to FileInfo
Information displayed includes:
The command line parameters of this tool are:
FileInfo -- Shows basic information about the file, such as data ranges and file type. Version: 2.0.0 May 16 2015, 09:22:21, Revision: GIT-NOTFOUND Usage: FileInfo <options> Options (mandatory options marked with '*'): -in <file>* Input file (valid formats: 'mzData', 'mzXML', 'mzML', 'dta', 'dta2d', 'mgf', 'featureXM L', 'consensusXML', 'idXML', 'pepXML', 'fid', 'mzid') -in_type <type> Input file type -- default: determined from file extension or content (valid: 'mzData', 'mzXML', 'mzML', 'dta', 'dta2d', 'mgf', 'featureXML', 'consensusXML', 'idXML', 'pepXML', 'fid', 'mzid') -out <file> Optional output file. If left out, the output is written to the command line. (valid formats: 'txt') -m Show meta information about the whole experiment -p Shows data processing information -s Computes a five-number statistics of intensities, qualities, and widths -d Show detailed listing of all spectra and chromatograms (peak files only) -c Check for corrupt data in the file (peak files only) -v Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML ) -i Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard) Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Sat May 16 2015 16:13:42 using doxygen 1.8.9.1 |