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MapAlignmentTransformer Class Reference

The MapAlignmentTransformer class. More...

#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h>

Static Public Member Functions

static void transformPeakMaps (std::vector< MSExperiment<> > &maps, const std::vector< TransformationDescription > &given_trafos)
 Applies the given transformations to peak maps. More...
 
static void transformFeatureMaps (std::vector< FeatureMap > &maps, const std::vector< TransformationDescription > &given_trafos)
 Applies the given transformations to feature maps. More...
 
static void transformConsensusMaps (std::vector< ConsensusMap > &maps, const std::vector< TransformationDescription > &given_trafos)
 Applies the given transformations to consensus maps. More...
 
static void transformPeptideIdentifications (std::vector< std::vector< PeptideIdentification > > &maps, const std::vector< TransformationDescription > &given_trafos)
 Applies the given transformations to peptide identifications. More...
 
static void transformSinglePeakMap (MSExperiment<> &msexp, const TransformationDescription &trafo)
 Applies the given transformations to a single peak map. More...
 
static void transformSingleFeatureMap (FeatureMap &fmap, const TransformationDescription &trafo)
 Applies the given transformations to a single feature map. More...
 
static void transformSingleConsensusMap (ConsensusMap &cmap, const TransformationDescription &trafo)
 Applies the given transformations to a single consensus map. More...
 
static void transformSinglePeptideIdentification (std::vector< PeptideIdentification > &pepids, const TransformationDescription &trafo)
 Applies the given transformations to a single peptide identification. More...
 

Static Private Member Functions

static void applyToFeature_ (Feature &feature, const TransformationDescription &trafo)
 apply a transformation to a feature More...
 
static void applyToBaseFeature_ (BaseFeature &feature, const TransformationDescription &trafo)
 apply a transformation to a basic feature More...
 
static void applyToConsensusFeature_ (ConsensusFeature &feature, const TransformationDescription &trafo)
 apply a transformation to a consensus feature More...
 

Detailed Description

The MapAlignmentTransformer class.

Member Function Documentation

static void applyToBaseFeature_ ( BaseFeature feature,
const TransformationDescription trafo 
)
staticprivate

apply a transformation to a basic feature

static void applyToConsensusFeature_ ( ConsensusFeature feature,
const TransformationDescription trafo 
)
staticprivate

apply a transformation to a consensus feature

static void applyToFeature_ ( Feature feature,
const TransformationDescription trafo 
)
staticprivate

apply a transformation to a feature

static void transformConsensusMaps ( std::vector< ConsensusMap > &  maps,
const std::vector< TransformationDescription > &  given_trafos 
)
static

Applies the given transformations to consensus maps.

static void transformFeatureMaps ( std::vector< FeatureMap > &  maps,
const std::vector< TransformationDescription > &  given_trafos 
)
static

Applies the given transformations to feature maps.

static void transformPeakMaps ( std::vector< MSExperiment<> > &  maps,
const std::vector< TransformationDescription > &  given_trafos 
)
static

Applies the given transformations to peak maps.

static void transformPeptideIdentifications ( std::vector< std::vector< PeptideIdentification > > &  maps,
const std::vector< TransformationDescription > &  given_trafos 
)
static

Applies the given transformations to peptide identifications.

static void transformSingleConsensusMap ( ConsensusMap cmap,
const TransformationDescription trafo 
)
static

Applies the given transformations to a single consensus map.

static void transformSingleFeatureMap ( FeatureMap fmap,
const TransformationDescription trafo 
)
static

Applies the given transformations to a single feature map.

static void transformSinglePeakMap ( MSExperiment<> &  msexp,
const TransformationDescription trafo 
)
static

Applies the given transformations to a single peak map.

static void transformSinglePeptideIdentification ( std::vector< PeptideIdentification > &  pepids,
const TransformationDescription trafo 
)
static

Applies the given transformations to a single peptide identification.


OpenMS / TOPP release 2.0.0 Documentation generated on Sat May 16 2015 16:13:55 using doxygen 1.8.9.1