fslpy
1.12.0
fslpy
fsl
Contributing to
fslpy
fslpy
release history
fslpy
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Index
Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
A
abs() (fsl.wrappers.fslmaths.fslmaths method)
add() (fsl.wrappers.fslmaths.fslmaths method)
addAtlas() (fsl.data.atlases.AtlasRegistry method)
addComponent() (fsl.data.volumelabels.VolumeLabels method)
addExt() (in module fsl.data.image)
(in module fsl.utils.path)
addLabel() (fsl.data.volumelabels.VolumeLabels method)
addVertexData() (fsl.data.mesh.Mesh method)
addVertices() (fsl.data.mesh.Mesh method)
adjustCoverage() (in module fsl.data.imagewrapper)
allFiles() (in module fsl.utils.path)
ALLOWED_EXTENSIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mesh)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
applyArgStyle() (in module fsl.wrappers.wrapperutils)
applywarp() (in module fsl.wrappers.fnirt)
applyxfm() (in module fsl.wrappers.flirt)
assertFileExists() (in module fsl.utils.assertions)
assertIsFuncGifti() (in module fsl.utils.assertions)
assertIsMelodicDir() (in module fsl.utils.assertions)
assertIsNifti() (in module fsl.utils.assertions)
assertIsNifti3D() (in module fsl.utils.assertions)
assertIsNifti4D() (in module fsl.utils.assertions)
assertIsSurfGifti() (in module fsl.utils.assertions)
assertNiftiShape() (in module fsl.utils.assertions)
Atlas (class in fsl.data.atlases)
AtlasDescription (class in fsl.data.atlases)
AtlasLabel (class in fsl.data.atlases)
atlasOrDesc() (in module fsl.scripts.atlasq)
atlasquery_emulation() (in module fsl.scripts.atlasq)
AtlasRegistry (class in fsl.data.atlases)
axisAnglesToRotMat() (in module fsl.utils.transform)
axisBounds() (in module fsl.utils.transform)
axisMapping() (fsl.data.image.Nifti method)
B
BasisFunctionEV (class in fsl.data.featdesign)
bet() (in module fsl.wrappers.bet)
bin() (fsl.wrappers.fslmaths.fslmaths method)
binv() (fsl.wrappers.fslmaths.fslmaths method)
bounds (fsl.data.mesh.Mesh attribute)
bptf() (fsl.wrappers.fslmaths.fslmaths method)
C
Cache (class in fsl.utils.cache)
CacheItem (class in fsl.utils.cache)
calcExpansion() (in module fsl.data.imagewrapper)
calcFaceNormals() (in module fsl.data.mesh)
calcRange() (fsl.data.image.Image method)
calcVertexNormals() (in module fsl.data.mesh)
cancelIdle() (in module fsl.utils.idle)
canHaveGui (fsl.utils.platform.Platform attribute)
canonicalShape() (in module fsl.data.image)
(in module fsl.data.imagewrapper)
canonicalSliceObj() (in module fsl.data.imagewrapper)
clear() (fsl.data.volumelabels.VolumeLabels method)
(fsl.utils.cache.Cache method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
clearComponents() (fsl.data.volumelabels.VolumeLabels method)
clearLabels() (fsl.data.volumelabels.VolumeLabels method)
clearVertexData() (fsl.data.mesh.Mesh method)
cluster() (in module fsl.wrappers.misc)
clusterResults() (fsl.data.featimage.FEATImage method)
cmdwrapper() (in module fsl.wrappers.wrapperutils)
collapseExpansions() (in module fsl.data.imagewrapper)
compareVersions() (in module fsl.version)
compose() (in module fsl.utils.transform)
concat() (in module fsl.utils.transform)
concatxfm() (in module fsl.wrappers.flirt)
configDir (fsl.utils.settings.Settings attribute)
configID (fsl.utils.settings.Settings attribute)
ConfoundEV (class in fsl.data.featdesign)
contrastNames() (fsl.data.featimage.FEATImage method)
contrasts() (fsl.data.featimage.FEATImage method)
convertwarp() (in module fsl.wrappers.fnirt)
coordLabel() (fsl.data.atlases.LabelAtlas method)
coordProportions() (fsl.data.atlases.ProbabilisticAtlas method)
coordQuery() (in module fsl.scripts.atlasq)
CORE_GEOMETRY_DESCRIPTIONS (in module fsl.data.freesurfer)
CORE_GEOMETRY_FILES (in module fsl.data.freesurfer)
coverage() (fsl.data.imagewrapper.ImageWrapper method)
covered (fsl.data.imagewrapper.ImageWrapper attribute)
createLock (fsl.utils.idle.MutexFactory attribute)
D
data (fsl.data.image.Image attribute)
dataRange (fsl.data.image.Image attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
dataSource (fsl.data.image.Image attribute)
(fsl.data.mesh.Mesh attribute)
decompose() (in module fsl.utils.transform)
decomposeTensorMatrix() (in module fsl.data.dtifit)
deepest() (in module fsl.utils.path)
DEFAULT_TOPIC (in module fsl.utils.notifier)
defaultExt() (in module fsl.data.image)
delete() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deleteFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
dequeue() (fsl.utils.idle.TaskThread method)
deregister() (fsl.utils.notifier.Notifier method)
dicomDir (fsl.data.dicom.DicomImage attribute)
DicomImage (class in fsl.data.dicom)
dilF() (fsl.wrappers.fslmaths.fslmaths method)
dilM() (fsl.wrappers.fslmaths.fslmaths method)
disable() (fsl.utils.notifier.Notifier method)
disableAll() (fsl.utils.notifier.Notifier method)
disabled() (in module fsl.utils.assertions)
div() (fsl.wrappers.fslmaths.fslmaths method)
DRY_RUN (in module fsl.utils.run)
dryrun() (in module fsl.utils.run)
DTIFitTensor (class in fsl.data.dtifit)
dtype (fsl.data.image.Image attribute)
E
eddy_cuda() (in module fsl.wrappers.eddy)
enable() (fsl.utils.notifier.Notifier method)
enableAll() (fsl.utils.notifier.Notifier method)
enqueue() (fsl.utils.idle.TaskThread method)
ensureIsImage() (in module fsl.utils.ensure)
ero() (fsl.wrappers.fslmaths.fslmaths method)
EV (class in fsl.data.featdesign)
evNames() (fsl.data.featimage.FEATImage method)
expectedShape() (in module fsl.data.imagewrapper)
Expired
EXTENSION_DESCRIPTIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mesh)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
EXTRA_GEOMETRY_FILES (in module fsl.data.freesurfer)
F
fast() (in module fsl.wrappers.fast)
FEATFSFDesign (class in fsl.data.featdesign)
FEATImage (class in fsl.data.featimage)
FILE_GROUPS (in module fsl.data.image)
fileOrArray() (in module fsl.wrappers.wrapperutils)
fileOrImage() (in module fsl.wrappers.wrapperutils)
filePath() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
fillh() (fsl.wrappers.fslmaths.fslmaths method)
find() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
findReferenceImage() (in module fsl.data.freesurfer)
(in module fsl.data.mesh)
(in module fsl.data.vtk)
fit() (fsl.data.featimage.FEATImage method)
flirt() (in module fsl.wrappers.flirt)
flirtMatrixToSform() (in module fsl.utils.transform)
fnirt() (in module fsl.wrappers.fnirt)
FreesurferMesh (class in fsl.data.freesurfer)
frozen (fsl.utils.platform.Platform attribute)
FSFError
fsl (module)
fsl.data (module)
fsl.data.atlases (module)
fsl.data.constants (module)
fsl.data.dicom (module)
fsl.data.dtifit (module)
fsl.data.featanalysis (module)
fsl.data.featdesign (module)
fsl.data.featimage (module)
fsl.data.fixlabels (module)
fsl.data.freesurfer (module)
fsl.data.gifti (module)
fsl.data.image (module)
fsl.data.imagewrapper (module)
fsl.data.melodicanalysis (module)
fsl.data.melodicimage (module)
fsl.data.mesh (module)
fsl.data.mghimage (module)
fsl.data.vest (module)
fsl.data.volumelabels (module)
fsl.data.vtk (module)
fsl.scripts (module)
fsl.scripts.atlasq (module)
fsl.scripts.fsl_ents (module)
fsl.scripts.imcp (module)
fsl.scripts.imglob (module)
fsl.scripts.immv (module)
fsl.utils (module)
fsl.utils.assertions (module)
fsl.utils.cache (module)
fsl.utils.ensure (module)
fsl.utils.fslsub (module)
fsl.utils.idle (module)
fsl.utils.imcp (module)
fsl.utils.memoize (module)
fsl.utils.meta (module)
fsl.utils.naninfrange (module)
fsl.utils.notifier (module)
fsl.utils.path (module)
fsl.utils.platform (module)
fsl.utils.run (module)
fsl.utils.settings (module)
fsl.utils.tempdir (module)
fsl.utils.transform (module)
fsl.utils.weakfuncref (module)
fsl.version (module)
fsl.wrappers (module)
fsl.wrappers.bet (module)
fsl.wrappers.eddy (module)
fsl.wrappers.fast (module)
fsl.wrappers.flirt (module)
fsl.wrappers.fnirt (module)
fsl.wrappers.fslmaths (module)
fsl.wrappers.fugue (module)
fsl.wrappers.melodic (module)
fsl.wrappers.misc (module)
fsl.wrappers.wrapperutils (module)
FSL_PREFIX (in module fsl.utils.run)
fsl_regfilt() (in module fsl.wrappers.melodic)
fsldevdir (fsl.utils.platform.Platform attribute)
fsldir (fsl.utils.platform.Platform attribute)
fslmaths (class in fsl.wrappers.fslmaths)
FSLNotPresent
fslreorient2std() (in module fsl.wrappers.misc)
fslroi() (in module fsl.wrappers.misc)
fslVersion (fsl.utils.platform.Platform attribute)
fslwrapper() (in module fsl.wrappers.wrapperutils)
fugue() (in module fsl.wrappers.fugue)
func_to_cmd() (in module fsl.utils.fslsub)
function() (fsl.utils.weakfuncref.WeakFunctionRef method)
G
genComponentIndexList() (in module fsl.scripts.fsl_ents)
get() (fsl.data.dicom.DicomImage method)
(fsl.utils.cache.Cache method)
getAllLabels() (fsl.data.volumelabels.VolumeLabels method)
getAnalysisDir() (in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getAnalysisName() (fsl.data.featimage.FEATImage method)
getAtlasDescription() (fsl.data.atlases.AtlasRegistry method)
getBounds() (fsl.data.mesh.TriangleMesh method)
getClusterMask() (fsl.data.featimage.FEATImage method)
getClusterMaskFile() (in module fsl.data.featanalysis)
getComponentPowerSpectra() (in module fsl.data.melodicanalysis)
getComponentPowerSpectrum() (fsl.data.melodicimage.MelodicImage method)
getComponents() (fsl.data.volumelabels.VolumeLabels method)
getComponentTimeSeries() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getCOPE() (fsl.data.featimage.FEATImage method)
getCOPEFile() (in module fsl.data.featanalysis)
getDataFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getDesign() (fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featimage.FEATImage method)
getDisplayLabel() (fsl.data.volumelabels.VolumeLabels method)
getDTIFitDataPrefix() (in module fsl.data.dtifit)
getEVs() (fsl.data.featdesign.FEATFSFDesign method)
getExt() (in module fsl.data.image)
(in module fsl.utils.path)
getFEATDir() (fsl.data.featimage.FEATImage method)
getFileGroup() (in module fsl.utils.path)
getFirstLevelEVs() (in module fsl.data.featdesign)
getFIRSTPrefix() (in module fsl.data.mesh)
(in module fsl.data.vtk)
getFTMixFile() (in module fsl.data.melodicanalysis)
getHigherLevelEVs() (in module fsl.data.featdesign)
getICFile() (in module fsl.data.melodicanalysis)
getIdleTimeout() (in module fsl.utils.idle)
getImageWrapper() (fsl.data.image.Image method)
getLabels() (fsl.data.volumelabels.VolumeLabels method)
getMeanFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getMelodicDir() (fsl.data.melodicimage.MelodicImage method)
getMelodicFile() (in module fsl.data.featanalysis)
getMeta() (fsl.utils.meta.Meta method)
getMixFile() (in module fsl.data.melodicanalysis)
getNumComponents() (in module fsl.data.melodicanalysis)
getOrientation() (fsl.data.image.Nifti method)
getPE() (fsl.data.featimage.FEATImage method)
getPEFile() (in module fsl.data.featanalysis)
getReportFile() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getResidualFile() (in module fsl.data.featanalysis)
getResiduals() (fsl.data.featimage.FEATImage method)
getTaskThread() (fsl.data.imagewrapper.ImageWrapper method)
getThresholds() (in module fsl.data.featanalysis)
getTopLevelAnalysisDir() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getVertexData() (fsl.data.mesh.Mesh method)
(fsl.data.mesh.TriangleMesh method)
getVertexDataColourTable() (fsl.data.freesurfer.FreesurferMesh method)
getXFormCode() (fsl.data.image.Nifti method)
getZStatFile() (in module fsl.data.featanalysis)
getZStats() (fsl.data.featimage.FEATImage method)
GiftiMesh (class in fsl.data.gifti)
GiftiSurface (class in fsl.data.gifti)
glIsSoftwareRenderer (fsl.utils.platform.Platform attribute)
glRenderer (fsl.utils.platform.Platform attribute)
glVersion (fsl.utils.platform.Platform attribute)
H
hasAtlas() (fsl.data.atlases.AtlasRegistry method)
hasComponent() (fsl.data.volumelabels.VolumeLabels method)
hasExt() (in module fsl.utils.path)
hasLabel() (fsl.data.volumelabels.VolumeLabels method)
hasMelodicDir() (in module fsl.data.featanalysis)
hasStats() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
haveGui (fsl.utils.platform.Platform attribute)
HelpFormatter (class in fsl.scripts.atlasq)
HIDE_IF_TRUE (in module fsl.wrappers.wrapperutils)
I
identifyAtlas() (in module fsl.scripts.atlasq)
IdentifyError
idle() (in module fsl.utils.idle)
idleReset() (in module fsl.utils.idle)
IdleTask (class in fsl.utils.idle)
idleWhen() (in module fsl.utils.idle)
Image (class in fsl.data.image)
image (fsl.data.featdesign.VoxelwiseEV attribute)
ImageWrapper (class in fsl.data.imagewrapper)
imcp() (in module fsl.utils.imcp)
imglob() (in module fsl.scripts.imglob)
immv() (in module fsl.utils.imcp)
indices (fsl.data.mesh.Mesh attribute)
info() (in module fsl.utils.fslsub)
inIdle() (in module fsl.utils.idle)
initialise() (in module fsl.utils.settings)
inm() (fsl.wrappers.fslmaths.fslmaths method)
inSSHSession (fsl.utils.platform.Platform attribute)
Instanceify (class in fsl.utils.memoize)
intent (fsl.data.image.Nifti attribute)
invalidate() (fsl.utils.memoize.Memoize method)
InvalidLabelFileError
invert() (in module fsl.utils.transform)
inVNCSession (fsl.utils.platform.Platform attribute)
invwarp() (in module fsl.wrappers.fnirt)
invxfm() (in module fsl.wrappers.flirt)
is4DImage() (fsl.data.image.Nifti method)
isAllEnabled() (fsl.utils.notifier.Notifier method)
isDTIFitPath() (in module fsl.data.dtifit)
isEnabled() (fsl.utils.notifier.Notifier method)
isFEATDir() (in module fsl.data.featanalysis)
isFEATImage() (in module fsl.data.featanalysis)
isFirstLevelAnalysis() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
isMelodicDir() (in module fsl.data.melodicanalysis)
isMelodicImage() (in module fsl.data.melodicanalysis)
isNeurological() (fsl.data.image.Nifti method)
isNoisyComponent() (in module fsl.data.fixlabels)
isQueued() (fsl.utils.idle.TaskThread method)
isValidFancySliceObj() (in module fsl.data.imagewrapper)
isWidgetAlive() (in module fsl.utils.platform)
items() (fsl.data.dicom.DicomImage method)
K
keys() (fsl.data.dicom.DicomImage method)
L
L1() (fsl.data.dtifit.DTIFitTensor method)
L2() (fsl.data.dtifit.DTIFitTensor method)
L3() (fsl.data.dtifit.DTIFitTensor method)
label() (fsl.data.atlases.LabelAtlas method)
LabelAtlas (class in fsl.data.atlases)
labelNames() (in module fsl.scripts.atlasq)
listAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.scripts.atlasq)
listFiles() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
LOAD (in module fsl.wrappers.wrapperutils)
load() (fsl.data.volumelabels.VolumeLabels method)
loadAtlas() (fsl.data.atlases.AtlasRegistry method)
loadClusterResults() (in module fsl.data.featanalysis)
loadConfoundFiles() (in module fsl.scripts.fsl_ents)
loadContrasts() (in module fsl.data.featanalysis)
loadData() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
loadDesign() (in module fsl.data.featanalysis)
loadDesignMat() (in module fsl.data.featdesign)
loadGiftiMesh() (in module fsl.data.gifti)
loadGiftiSurface() (in module fsl.data.gifti)
loadGiftiVertexData() (in module fsl.data.gifti)
loadIndexedImageFile() (in module fsl.data.image)
loadLabelFile() (in module fsl.data.fixlabels)
loadSeries() (in module fsl.data.dicom)
loadSettings() (in module fsl.data.featanalysis)
loadVertexData() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.gifti.GiftiSurface method)
(fsl.data.mesh.Mesh method)
(fsl.data.mesh.TriangleMesh method)
loadVertexDataFile() (in module fsl.data.freesurfer)
loadVertices() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVestLutFile() (in module fsl.data.vest)
loadVTKPolydataFile() (in module fsl.data.mesh)
(in module fsl.data.vtk)
looksLikeImage() (in module fsl.data.image)
looksLikeTensorImage() (in module fsl.data.dtifit)
looksLikeVestLutFile() (in module fsl.data.vest)
M
main() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.imcp)
(in module fsl.scripts.imglob)
(in module fsl.scripts.immv)
mapIndices() (fsl.data.image.Nifti method)
mas() (fsl.wrappers.fslmaths.fslmaths method)
MaskError
maskLabel() (fsl.data.atlases.LabelAtlas method)
maskProportions() (fsl.data.atlases.ProbabilisticAtlas method)
maskQuery() (in module fsl.scripts.atlasq)
mcflirt() (in module fsl.wrappers.flirt)
melodic() (in module fsl.wrappers.melodic)
MelodicImage (class in fsl.data.melodicimage)
Memoize (class in fsl.utils.memoize)
memoize() (in module fsl.utils.memoize)
memoizeMD5() (in module fsl.utils.memoize)
Mesh (class in fsl.data.mesh)
Meta (class in fsl.utils.meta)
metaItems() (fsl.utils.meta.Meta method)
metaKeys() (fsl.utils.meta.Meta method)
metaValues() (fsl.utils.meta.Meta method)
MGHImage (class in fsl.data.mghimage)
mghImageFile (fsl.data.mghimage.MGHImage attribute)
MIN_DCM2NIIX_VERSION (in module fsl.data.dicom)
modelFit() (in module fsl.data.featimage)
MotionParameterEV (class in fsl.data.featdesign)
mul() (fsl.wrappers.fslmaths.fslmaths method)
mutex() (in module fsl.utils.idle)
MutexFactory (class in fsl.utils.idle)
N
name (fsl.data.mesh.Mesh attribute)
namedPositionals() (in module fsl.wrappers.wrapperutils)
naninfrange() (in module fsl.data.imagewrapper)
(in module fsl.utils.naninfrange)
ndim (fsl.data.image.Nifti attribute)
ndims (fsl.data.image.Nifti attribute)
nearestVertex() (fsl.data.mesh.Mesh method)
needsFixing() (in module fsl.data.mesh)
nibImage (fsl.data.image.Image attribute)
Nifti (class in fsl.data.image)
NIFTI_XFORM_ALIGNED_ANAT (in module fsl.data.constants)
NIFTI_XFORM_ANALYZE (in module fsl.data.constants)
NIFTI_XFORM_MNI_152 (in module fsl.data.constants)
NIFTI_XFORM_SCANNER_ANAT (in module fsl.data.constants)
NIFTI_XFORM_TALAIRACH (in module fsl.data.constants)
NIFTI_XFORM_UNKNOWN (in module fsl.data.constants)
niftiVersion (fsl.data.image.Nifti attribute)
NormalEV (class in fsl.data.featdesign)
normalise() (in module fsl.utils.transform)
normals (fsl.data.mesh.Mesh attribute)
Notifier (class in fsl.utils.notifier)
notify() (fsl.utils.notifier.Notifier method)
numComponents() (fsl.data.melodicimage.MelodicImage method)
(fsl.data.volumelabels.VolumeLabels method)
numContrasts() (fsl.data.featimage.FEATImage method)
numEVs() (fsl.data.featimage.FEATImage method)
numPoints() (fsl.data.featimage.FEATImage method)
nvertices (fsl.data.mesh.Mesh attribute)
O
ohi() (in module fsl.scripts.atlasq)
ORIENT_A2P (in module fsl.data.constants)
ORIENT_I2S (in module fsl.data.constants)
ORIENT_L2R (in module fsl.data.constants)
ORIENT_P2A (in module fsl.data.constants)
ORIENT_R2L (in module fsl.data.constants)
ORIENT_S2I (in module fsl.data.constants)
ORIENT_UNKNOWN (in module fsl.data.constants)
os (fsl.utils.platform.Platform attribute)
output() (in module fsl.utils.fslsub)
OVERLAP_ALL (in module fsl.data.imagewrapper)
OVERLAP_NONE (in module fsl.data.imagewrapper)
OVERLAP_SOME (in module fsl.data.imagewrapper)
P
parseArgs() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_ents)
parseVersionString() (in module fsl.version)
partialFit() (fsl.data.featimage.FEATImage method)
patchVersion() (in module fsl.version)
PathError
,
[1]
pixdim (fsl.data.image.Nifti attribute)
planeIntersection() (fsl.data.mesh.Mesh method)
Platform (class in fsl.utils.platform)
platform (in module fsl.utils.platform)
prepareMask() (fsl.data.atlases.Atlas method)
printColumns() (in module fsl.scripts.atlasq)
ProbabilisticAtlas (class in fsl.data.atlases)
proportions() (fsl.data.atlases.ProbabilisticAtlas method)
put() (fsl.utils.cache.Cache method)
Q
queryAtlas() (in module fsl.scripts.atlasq)
queryLongOutput() (in module fsl.scripts.atlasq)
queryShortOutput() (in module fsl.scripts.atlasq)
R
rayIntersection() (fsl.data.mesh.Mesh method)
read() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
read_segments() (in module fsl.data.image)
readAll() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
recip() (fsl.wrappers.fslmaths.fslmaths method)
register() (fsl.utils.notifier.Notifier method)
Registered
relatedFiles() (in module fsl.data.gifti)
relatedGeometryFiles() (in module fsl.data.freesurfer)
relatedVertexDataFiles() (in module fsl.data.freesurfer)
rem() (fsl.wrappers.fslmaths.fslmaths method)
removeAtlas() (fsl.data.atlases.AtlasRegistry method)
removeComponent() (fsl.data.volumelabels.VolumeLabels method)
removeDuplicates() (in module fsl.utils.path)
removeExt() (in module fsl.data.image)
(in module fsl.utils.path)
removeLabel() (fsl.data.volumelabels.VolumeLabels method)
resample() (fsl.data.image.Image method)
rescanAtlases() (fsl.data.atlases.AtlasRegistry method)
reset() (fsl.data.imagewrapper.ImageWrapper method)
rmsdev() (in module fsl.utils.transform)
robustfov() (in module fsl.wrappers.bet)
rotMatToAffine() (in module fsl.utils.transform)
rotMatToAxisAngles() (in module fsl.utils.transform)
run() (fsl.utils.idle.TaskThread method)
(fsl.wrappers.fslmaths.fslmaths method)
(in module fsl.utils.idle)
(in module fsl.utils.run)
runfsl() (in module fsl.utils.run)
S
sameSpace() (fsl.data.image.Nifti method)
save() (fsl.data.image.Image method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
saveLabelFile() (in module fsl.data.fixlabels)
saveState (fsl.data.image.Image attribute)
scaledVoxToVoxMat (fsl.data.image.Nifti attribute)
scaleOffsetXform() (in module fsl.utils.transform)
scanDir() (in module fsl.data.dicom)
selectedVertices() (fsl.data.mesh.Mesh method)
set() (in module fsl.utils.settings)
setIdleTimeout() (in module fsl.utils.idle)
setMeta() (fsl.utils.meta.Meta method)
Settings (class in fsl.utils.settings)
sformToFlirtMatrix() (in module fsl.utils.transform)
shallowest() (in module fsl.utils.path)
shape (fsl.data.image.Nifti attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
SHOW_IF_TRUE (in module fsl.wrappers.wrapperutils)
sigloss() (in module fsl.wrappers.fugue)
skip() (fsl.utils.notifier.Notifier method)
skipAll() (fsl.utils.notifier.Notifier method)
skipUnchanged() (in module fsl.utils.memoize)
sliceCovered() (in module fsl.data.imagewrapper)
sliceObjToSliceTuple() (in module fsl.data.imagewrapper)
sliceOverlap() (in module fsl.data.imagewrapper)
slicer() (in module fsl.wrappers.misc)
sliceTupleToSliceObj() (in module fsl.data.imagewrapper)
splitExt() (in module fsl.data.image)
(in module fsl.utils.path)
stop() (fsl.utils.idle.TaskThread method)
strval() (fsl.data.image.Nifti method)
sub() (fsl.wrappers.fslmaths.fslmaths method)
submit() (in module fsl.utils.fslsub)
summariseAtlas() (in module fsl.scripts.atlasq)
surfToVoxMat (fsl.data.mghimage.MGHImage attribute)
surfToWorldMat (fsl.data.mghimage.MGHImage attribute)
T
Task (class in fsl.utils.idle)
TaskThread (class in fsl.utils.idle)
TaskThreadVeto
tempdir() (in module fsl.utils.tempdir)
TemporalDerivativeEV (class in fsl.data.featdesign)
thr() (fsl.wrappers.fslmaths.fslmaths method)
thresholds() (fsl.data.featimage.FEATImage method)
timeUnits (fsl.data.image.Nifti attribute)
Tmax() (fsl.wrappers.fslmaths.fslmaths method)
Tmean() (fsl.wrappers.fslmaths.fslmaths method)
Tmin() (fsl.wrappers.fslmaths.fslmaths method)
topup() (in module fsl.wrappers.eddy)
tr (fsl.data.melodicimage.MelodicImage attribute)
transform() (in module fsl.utils.transform)
transformNormal() (in module fsl.utils.transform)
TriangleMesh (class in fsl.data.mesh)
trimesh (fsl.data.mesh.Mesh attribute)
Tstd() (fsl.wrappers.fslmaths.fslmaths method)
U
uniquePrefix() (in module fsl.utils.path)
use() (in module fsl.utils.settings)
uthr() (fsl.wrappers.fslmaths.fslmaths method)
V
V1() (fsl.data.dtifit.DTIFitTensor method)
V2() (fsl.data.dtifit.DTIFitTensor method)
V3() (fsl.data.dtifit.DTIFitTensor method)
values() (fsl.data.dicom.DicomImage method)
veclength() (in module fsl.utils.transform)
VERTEX_ANNOT_FILES (in module fsl.data.freesurfer)
VERTEX_DATA_FILES (in module fsl.data.freesurfer)
VERTEX_LABEL_FILES (in module fsl.data.freesurfer)
VERTEX_MGH_FILES (in module fsl.data.freesurfer)
vertexDataSets() (fsl.data.mesh.Mesh method)
vertexSets() (fsl.data.mesh.Mesh method)
vertices (fsl.data.mesh.Mesh attribute)
vnormals (fsl.data.mesh.Mesh attribute)
VolumeLabels (class in fsl.data.volumelabels)
voxelsToScaledVoxels() (fsl.data.image.Nifti method)
VoxelwiseConfoundEV (class in fsl.data.featdesign)
VoxelwiseEV (class in fsl.data.featdesign)
voxToScaledVoxMat (fsl.data.image.Nifti attribute)
voxToSurfMat (fsl.data.mghimage.MGHImage attribute)
voxToWorldMat (fsl.data.image.Image attribute)
(fsl.data.image.Nifti attribute)
VTKMesh (class in fsl.data.vtk)
W
wait() (in module fsl.utils.fslsub)
(in module fsl.utils.idle)
(in module fsl.utils.run)
waitUntilIdle() (fsl.utils.idle.TaskThread method)
WeakFunctionRef (class in fsl.utils.weakfuncref)
worldToSurfMat (fsl.data.mghimage.MGHImage attribute)
worldToVoxMat (fsl.data.image.Nifti attribute)
write() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeConfigFile() (fsl.utils.settings.Settings method)
writeFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
WX_GTK (in module fsl.utils.platform)
WX_MAC_CARBON (in module fsl.utils.platform)
WX_MAC_COCOA (in module fsl.utils.platform)
WX_PHOENIX (in module fsl.utils.platform)
WX_PYTHON (in module fsl.utils.platform)
WX_UNKNOWN (in module fsl.utils.platform)
wxFlavour (fsl.utils.platform.Platform attribute)
wxPlatform (fsl.utils.platform.Platform attribute)
X
xyzUnits (fsl.data.image.Nifti attribute)