bids
  • User guide: table of contents
  • API Reference
  • Changelog
bids
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Welcome to pybids’s documentation!¶

pybids is a set of tools for working with Brain Imaging Data Structure (BIDS) datasets. For more information about BIDS, please visit the BIDS website.

Contents¶

  • User guide: table of contents
    • 1. Introduction: What is pybids?
    • 2. layout: Querying BIDS datasets
    • 3. analysis: Model specification for BIDS datasets
    • 4. reports: Data acquisition report generation
  • API Reference
    • bids.layout: Querying BIDS datasets
    • bids.analysis: Model specification for BIDS datasets
    • bids.reports: Data acquisition report generation
    • bids.variables: Variables
    • bids.utils: Utility functions
  • Changelog
    • Version 0.9.2 (July 12, 2019)
    • Version 0.9.1 (May 24, 2019)
    • Version 0.9.0 (May 21, 2019)
    • Version 0.8.0 (February 15, 2019)
    • Version 0.7.1 (February 01, 2019)
    • Version 0.7.0 (January 10, 2019)
    • Version 0.6.5 (August 21, 2018)
    • Version 0.5.1 (March 9, 2018)
    • Version 0.5.0 (March 6, 2018)
    • Version 0.4.2 (November 16, 2017)
    • Version 0.4.1 (November 3, 2017)
    • Version 0.4.0 (November 1, 2017)
    • Version 0.3.0 (August 11, 2017)
    • Version 0.2.1 (June 8, 2017)

Citing pybids¶

To cite pybids, please cite the original paper proposing BIDS:

Gorgolewski, K. J., Auer, T., Calhoun, V. D., Craddock, R. C., Das, S., Duff, E. P., … & Handwerker, D. A. (2016). The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data, 3, 160044. https://doi.org/10.1038/sdata.2016.44

Indices and tables¶

  • Index

  • Module Index

  • Search Page

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