OpenMS
2.4.0
- a -
addMS2MarkerIons() :
RNPxlSearch::RNPxlFragmentIonGenerator
addPrecursorWithCompleteRNA_() :
RNPxlSearch::RNPxlFragmentIonGenerator
addShiftedImmoniumIons() :
RNPxlSearch::RNPxlFragmentIonGenerator
addSpecialLysImmonumIons() :
RNPxlSearch::RNPxlFragmentIonGenerator
- c -
calculateCorrelation() :
TOPPMetaProSIP
calculateDecompositionWeightsIsotopicPatterns() :
MetaProSIPDecomposition
calculateGlobalLR() :
TOPPMetaProSIP
calculateIsotopePatternsFor13CRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor13CRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor15NRangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor18ORangeOfAveraginePeptide() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRange() :
MetaProSIPDecomposition
calculateIsotopePatternsFor2HRangeOfAveraginePeptide() :
MetaProSIPDecomposition
checkRDependencies() :
RIntegration
clusterSIPPeptides() :
MetaProSIPClustering
correlateXICsToMono() :
MetaProSIPXICExtraction
createBinnedPeptideRIAData_() :
MetaProSIPReporting
createCSVReport() :
MetaProSIPReporting
createPeptideCentricCSVReport() :
MetaProSIPReporting
createQualityReport() :
MetaProSIPReporting
- e -
extractIncorporationsAtCorrelationMaxima() :
TOPPMetaProSIP
extractIncorporationsAtHeighestDecompositionWeights() :
TOPPMetaProSIP
extractIsotopicIntensities() :
TOPPMetaProSIP
extractPeakSpectrum() :
TOPPMetaProSIP
extractXICs() :
MetaProSIPXICExtraction
extractXICsOfIsotopeTraces() :
MetaProSIPXICExtraction
- f -
filterIsotopicIntensities() :
TOPPMetaProSIP
findApexRT() :
TOPPMetaProSIP
FragmentAdductDefinition_() :
RNPxlSearch::FragmentAdductDefinition_
- g -
generatePartialLossSpectrum() :
RNPxlSearch::RNPxlFragmentIonGenerator
getAllFeasibleFragmentAdducts() :
RNPxlSearch::RNPxlParameterParsing
getArchAsString() :
OpenMSOSInfo
getBestRateScorePair() :
TOPPMetaProSIP
getFeasibleFragmentAdducts() :
RNPxlSearch::RNPxlParameterParsing
getHighPoints() :
MetaProSIPInterpolation
getModifications() :
RNPxlSearch::RNPxlParameterParsing
getModifications_() :
SimpleSearchEngine
,
TOPPOpenPepXLLF
getNumberOfLabelingElements() :
MetaProSIPDecomposition
getOSAsString() :
OpenMSOSInfo
getRIAClusterCenter() :
MetaProSIPClustering
getTargetNucleotideToFragmentAdducts() :
RNPxlSearch::RNPxlParameterParsing
- h -
hasBetterScore() :
RNPxlSearch::AnnotatedHit
,
SimpleSearchEngine::AnnotatedHit
- i -
initializeSpectrumGenerators() :
RNPxlSearch
isotopicIntensitiesToSpectrum() :
TOPPMetaProSIP
- m -
main_() :
RNPxlSearch
,
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPOpenPepXL
,
TOPPOpenPepXLLF
mapPrecursorMassesToScans() :
RNPxlSearch
mergeSpectra() :
TOPPMetaProSIP
- n -
normalizeToMax() :
TOPPMetaProSIP
- o -
OpenMSOSInfo() :
OpenMSOSInfo
operator()() :
RIALess
,
SequenceLess
,
SizeLess
operator<() :
RNPxlSearch::FragmentAdductDefinition_
operator=() :
RNPxlSearch::FragmentAdductDefinition_
operator==() :
RNPxlSearch::FragmentAdductDefinition_
- p -
plotFilteredSpectra() :
MetaProSIPReporting
plotHeatMap() :
MetaProSIPReporting
plotScoresAndWeights() :
MetaProSIPReporting
postProcessHits_() :
RNPxlSearch
,
SimpleSearchEngine
postScoreHits_() :
RNPxlSearch
preprocessPairs_() :
TOPPOpenPepXL
preprocessSpectra_() :
RNPxlSearch
,
SimpleSearchEngine
- r -
registerOptionsAndFlags_() :
RNPxlSearch
,
SimpleSearchEngine
,
TOPPMetaProSIP
,
TOPPOpenPepXL
,
TOPPOpenPepXLLF
RNPxlSearch() :
RNPxlSearch
- s -
scorePartialLossFragments_() :
RNPxlSearch
scoreTotalLossFragments_() :
RNPxlSearch
SimpleSearchEngine() :
SimpleSearchEngine
- t -
TOPPMetaProSIP() :
TOPPMetaProSIP
TOPPOpenPepXL() :
TOPPOpenPepXL
TOPPOpenPepXLLF() :
TOPPOpenPepXLLF
- w -
writeHTML() :
MetaProSIPReporting
writePeakIntensities_() :
TOPPMetaProSIP
Generated on Fri Nov 2 2018 15:06:51 for OpenMS by
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