org.jmol.modelsetbio
public class AlphaMonomer extends Monomer
Field Summary | |
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static byte[] | alphaOffsets |
protected Point3f | nitrogenHydrogenPoint |
ProteinStructure | proteinStructure |
Constructor Summary | |
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AlphaMonomer(Chain chain, String group3, int seqcode, int firstAtomIndex, int lastAtomIndex, byte[] offsets) |
Method Summary | |
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Atom | getAtom(byte specialAtomID) |
Point3f | getAtomPoint(byte specialAtomID) |
ProteinStructure | getProteinStructure() |
int | getProteinStructureID() |
byte | getProteinStructureType() |
Object | getStructure() |
boolean | isAlphaMonomer() |
boolean | isConnectedAfter(Monomer possiblyPreviousMonomer) |
boolean | isHelix() |
boolean | isSheet() |
int | setProteinStructureType(byte iType, int monomerIndexCurrent) |
void | setStructure(ProteinStructure proteinStructure) |
static Monomer | validateAndAllocate(Chain chain, String group3, int seqcode, int firstIndex, int lastIndex, int[] specialAtomIndexes, Atom[] atoms) |
Parameters: iType monomerIndexCurrent a pointer to the current ProteinStructure
Returns: a pointer to this ProteinStructure