org.jmol.adapter.smarter

Class SmarterJmolAdapter.AtomIterator

class SmarterJmolAdapter.AtomIterator extends JmolAdapter.AtomIterator

Field Summary
Atomatom
intatomCount
Atom[]atoms
AtomSetCollectionatomSetCollection
intiatom
Constructor Summary
AtomIterator(AtomSetCollection atomSetCollection)
Method Summary
chargetAlternateLocationID()
StringgetAtomName()
intgetAtomSerial()
intgetAtomSetIndex()
intgetAtomSite()
BitSetgetAtomSymmetry()
floatgetBfactor()
chargetChainID()
intgetElementNumber()
StringgetElementSymbol()
Object[]getEllipsoid()
intgetFormalCharge()
StringgetGroup3()
chargetInsertionCode()
booleangetIsHetero()
intgetOccupancy()
floatgetPartialCharge()
floatgetRadius()
intgetSequenceNumber()
ObjectgetUniqueID()
floatgetVectorX()
floatgetVectorY()
floatgetVectorZ()
floatgetX()
floatgetY()
floatgetZ()
booleanhasNext()

Field Detail

atom

Atom atom

atomCount

int atomCount

atoms

Atom[] atoms

atomSetCollection

AtomSetCollection atomSetCollection

iatom

int iatom

Constructor Detail

AtomIterator

AtomIterator(AtomSetCollection atomSetCollection)

Method Detail

getAlternateLocationID

public char getAlternateLocationID()

getAtomName

public String getAtomName()

getAtomSerial

public int getAtomSerial()

getAtomSetIndex

public int getAtomSetIndex()

getAtomSite

public int getAtomSite()

getAtomSymmetry

public BitSet getAtomSymmetry()

getBfactor

public float getBfactor()

getChainID

public char getChainID()

getElementNumber

public int getElementNumber()

getElementSymbol

public String getElementSymbol()

getEllipsoid

public Object[] getEllipsoid()

getFormalCharge

public int getFormalCharge()

getGroup3

public String getGroup3()

getInsertionCode

public char getInsertionCode()

getIsHetero

public boolean getIsHetero()

getOccupancy

public int getOccupancy()

getPartialCharge

public float getPartialCharge()

getRadius

public float getRadius()

getSequenceNumber

public int getSequenceNumber()

getUniqueID

public Object getUniqueID()

getVectorX

public float getVectorX()

getVectorY

public float getVectorY()

getVectorZ

public float getVectorZ()

getX

public float getX()

getY

public float getY()

getZ

public float getZ()

hasNext

public boolean hasNext()