A B C D E F G H I L M N O P Q R S T U V W X misc
active | MaskCollection objects |
active-method | Collection of Filter Rules |
active-method | MaskCollection objects |
active<- | MaskCollection objects |
active<--method | Collection of Filter Rules |
active<--method | MaskCollection objects |
aggregate-method | External Data Frame |
aggregate-method | The DataTable API |
aggregate-method | Rle objects |
aggregate-method | Simple and Compressed List Classes |
aggregate-method | Vector objects |
all-method | Lists of Atomic Vectors in Natural and Rle Form |
Annotated | Annotated class |
Annotated-class | Annotated class |
append-method | Collection of Filter Rules |
append-method | MaskCollection objects |
append-method | Vector objects |
applyFun | Applying over spaces |
applyFun-method | Applying over spaces |
applyFun<- | Applying over spaces |
applyFun<--method | Applying over spaces |
applyParams | Applying over spaces |
applyParams-method | Applying over spaces |
applyParams<- | Applying over spaces |
applyParams<--method | Applying over spaces |
as.character-method | Rle objects |
as.character-method | Vector objects |
as.complex-method | Rle objects |
as.complex-method | Vector objects |
as.data.frame-method | External Data Frame |
as.data.frame-method | List of DataFrames |
as.data.frame-method | GappedRanges objects |
as.data.frame-method | Set of hits between 2 vector-like objects |
as.data.frame-method | OverlapEncodings objects |
as.data.frame-method | Data on ranges |
as.data.frame-method | Ranges objects |
as.data.frame-method | List of Ranges |
as.data.frame-method | Rle objects |
as.data.frame-method | Vector objects |
as.data.frame-method | XVectorList objects |
as.double-method | Vector objects |
as.env | List objects |
as.env-method | The DataTable API |
as.env-method | List objects |
as.env-method | Data on ranges |
as.factor-method | Rle objects |
as.integer-method | Ranges objects |
as.integer-method | Rle objects |
as.integer-method | Vector objects |
as.integer-method | XVector objects |
as.list-method | Lists of Atomic Vectors in Natural and Rle Form |
as.list-method | Set of hits between 2 vector-like objects |
as.list-method | List of IRanges and NormalIRanges |
as.list-method | List objects |
as.list-method | Rle objects |
as.list-method | Simple and Compressed List Classes |
as.logical-method | Rle objects |
as.logical-method | Vector objects |
as.matrix-method | External Data Frame |
as.matrix-method | Set of hits between 2 vector-like objects |
as.matrix-method | List of Hits objects |
as.matrix-method | Ranges objects |
as.matrix-method | Views objects |
as.matrix-method | List of Views |
as.numeric-method | Rle objects |
as.numeric-method | Vector objects |
as.numeric-method | XVector objects |
as.raw-method | Rle objects |
as.raw-method | Vector objects |
as.raw-method | XVector objects |
as.table-method | Set of hits between 2 vector-like objects |
as.table-method | List of Hits objects |
as.vector-method | Lists of Atomic Vectors in Natural and Rle Form |
as.vector-method | Rle objects |
as.vector-method | XVector objects |
as.vectorORfactor | Rle objects |
as.vectorORfactor-method | Rle objects |
asNormalIRanges | IRanges utility functions |
AtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
breakInChunks | IRanges utility functions |
by-method | The DataTable API |
c-method | Collection of Filter Rules |
c-method | GappedRanges objects |
c-method | IRanges and NormalIRanges objects |
c-method | Data on ranges |
c-method | Rle objects |
c-method | Simple and Compressed List Classes |
c-method | Vector objects |
c-method | XVector objects |
c-method | XVectorList objects |
cbind-method | External Data Frame |
cbind-method | List of DataFrames |
cbind-method | The DataTable API |
CharacterList | Lists of Atomic Vectors in Natural and Rle Form |
CharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
chartr-method | Lists of Atomic Vectors in Natural and Rle Form |
chartr-method | Rle objects |
class:CompressedIRangesList | List of IRanges and NormalIRanges |
class:CompressedNormalIRangesList | List of IRanges and NormalIRanges |
class:DataFrame | External Data Frame |
class:DataTable | The DataTable API |
class:DataTableORNULL | The DataTable API |
class:Dups | Grouping objects |
class:GappedRanges | GappedRanges objects |
class:GroupedIRanges | XVectorList objects |
class:Grouping | Grouping objects |
class:H2LGrouping | Grouping objects |
class:IRanges | IRanges and NormalIRanges objects |
class:IRangesList | List of IRanges and NormalIRanges |
class:List | List objects |
class:MaskCollection | MaskCollection objects |
class:NormalIRanges | IRanges and NormalIRanges objects |
class:NormalIRangesList | List of IRanges and NormalIRanges |
class:OverlapEncodings | OverlapEncodings objects |
class:Partitioning | Grouping objects |
class:PartitioningByEnd | Grouping objects |
class:PartitioningByWidth | Grouping objects |
class:RangedData | Data on ranges |
class:Ranges | Ranges objects |
class:RangesList-class | List of Ranges |
class:RangesORmissing | Finding the nearest range neighbor |
class:Rle | Rle objects |
class:RleViews | The RleViews class |
class:SimpleIRangesList | List of IRanges and NormalIRanges |
class:SimpleNormalIRangesList | List of IRanges and NormalIRanges |
class:SimpleRangesList-class | List of Ranges |
class:SimpleViewsList | List of Views |
class:Vector | Vector objects |
class:Views | Views objects |
class:ViewsList | List of Views |
class:XDouble | XVector objects |
class:XDoubleViews | The XDoubleViews class |
class:XInteger | XVector objects |
class:XIntegerViews | The XIntegerViews class |
class:XRaw | XVector objects |
class:XRawList | XRawList objects |
class:XVector | XVector objects |
class:XVectorList | XVectorList objects |
classNameForDisplay | Provide a class name for displaying to users |
classNameForDisplay-method | Provide a class name for displaying to users |
coerce-method | Lists of Atomic Vectors in Natural and Rle Form |
coerce-method | External Data Frame |
coerce-method | List of DataFrames |
coerce-method | GappedRanges objects |
coerce-method | Grouping objects |
coerce-method | Set of hits between 2 vector-like objects |
coerce-method | IRanges and NormalIRanges objects |
coerce-method | IRanges utility functions |
coerce-method | List of IRanges and NormalIRanges |
coerce-method | Interval Search Trees |
coerce-method | List objects |
coerce-method | MaskCollection objects |
coerce-method | Data on ranges |
coerce-method | Selection of ranges and columns |
coerce-method | List of Ranges |
coerce-method | Mapping of ranges to another sequence |
coerce-method | Rle objects |
coerce-method | The RleViews class |
coerce-method | List of RleViews |
coerce-method | Simple and Compressed List Classes |
coerce-method | Vector objects |
coerce-method | Views objects |
coerce-method | XVector objects |
collapse | MaskCollection objects |
collapse-method | MaskCollection objects |
colnames-method | External Data Frame |
colnames-method | List of DataFrames |
colnames-method | Data on ranges |
colnames-method | Selection of ranges and columns |
colnames<--method | External Data Frame |
colnames<--method | List of DataFrames |
colnames<--method | Data on ranges |
colnames<--method | Selection of ranges and columns |
columnMetadata | List of DataFrames |
columnMetadata-method | List of DataFrames |
columnMetadata-method | Data on ranges |
columnMetadata<- | List of DataFrames |
columnMetadata<--method | List of DataFrames |
columnMetadata<--method | Data on ranges |
compact | Object compaction |
compact-method | Object compaction |
compare | Comparing and ordering ranges |
compare-method | Comparing and ordering ranges |
complete.cases-method | The DataTable API |
Complex-method | Lists of Atomic Vectors in Natural and Rle Form |
Complex-method | Rle objects |
ComplexList | Lists of Atomic Vectors in Natural and Rle Form |
ComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedComplexList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedIRangesList | List of IRanges and NormalIRanges |
CompressedIRangesList-class | List of IRanges and NormalIRanges |
CompressedList | Simple and Compressed List Classes |
CompressedList-class | Simple and Compressed List Classes |
CompressedLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedNormalIRangesList | List of IRanges and NormalIRanges |
CompressedNormalIRangesList-class | List of IRanges and NormalIRanges |
CompressedNumericList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRawList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRleList | Lists of Atomic Vectors in Natural and Rle Form |
CompressedRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
CompressedSplitDataFrameList-class | List of DataFrames |
cor-method | Lists of Atomic Vectors in Natural and Rle Form |
cor-method | Rle objects |
countMatches | Comparing and ordering ranges |
countMatches-method | Comparing and ordering ranges |
countMatches-method | Finding overlapping ranges |
countOverlaps | Finding overlapping ranges |
countOverlaps-method | Finding overlapping ranges |
countQueryHits | Set of hits between 2 vector-like objects |
countQueryHits-method | Set of hits between 2 vector-like objects |
countSubjectHits | Set of hits between 2 vector-like objects |
countSubjectHits-method | Set of hits between 2 vector-like objects |
cov-method | Lists of Atomic Vectors in Natural and Rle Form |
cov-method | Rle objects |
coverage | Coverage across a set of ranges |
coverage-method | Coverage across a set of ranges |
coverage-methods | Coverage across a set of ranges |
cummax-method | Lists of Atomic Vectors in Natural and Rle Form |
cummin-method | Lists of Atomic Vectors in Natural and Rle Form |
cumprod-method | Lists of Atomic Vectors in Natural and Rle Form |
cumsum-method | Lists of Atomic Vectors in Natural and Rle Form |
DataFrame | External Data Frame |
DataFrame-class | External Data Frame |
DataFrameList | List of DataFrames |
DataFrameList-class | List of DataFrames |
DataTable | The DataTable API |
DataTable-API | The DataTable API |
DataTable-class | The DataTable API |
DataTable-stats | Statistical modeling with DataTable |
DataTableORNULL | The DataTable API |
DataTableORNULL-class | The DataTable API |
desc | MaskCollection objects |
desc-method | MaskCollection objects |
desc<- | MaskCollection objects |
desc<--method | MaskCollection objects |
diff-method | Lists of Atomic Vectors in Natural and Rle Form |
diff-method | Rle objects |
dim-method | List of DataFrames |
dim-method | The DataTable API |
dim-method | Mapping of ranges to another sequence |
dimnames-method | List of DataFrames |
dimnames-method | The DataTable API |
dimnames<--method | List of DataFrames |
dimnames<--method | The DataTable API |
disjoin | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjoin-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjointBins | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
disjointBins-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
distance | Finding the nearest range neighbor |
distance-method | Finding the nearest range neighbor |
distanceToNearest | Finding the nearest range neighbor |
distanceToNearest-method | Finding the nearest range neighbor |
drop-method | Lists of Atomic Vectors in Natural and Rle Form |
duplicated-method | Lists of Atomic Vectors in Natural and Rle Form |
duplicated-method | The DataTable API |
duplicated-method | Grouping objects |
duplicated-method | Comparing and ordering ranges |
Dups | Grouping objects |
Dups-class | Grouping objects |
elementLengths | List objects |
elementLengths-method | GappedRanges objects |
elementLengths-method | List objects |
elementLengths-method | Data on ranges |
elementLengths-method | Ranges objects |
elementLengths-method | Views objects |
elementMetadata | Vector objects |
elementMetadata-method | Vector objects |
elementMetadata<- | Vector objects |
elementMetadata<--method | Vector objects |
elementType | List objects |
elementType-method | List objects |
encodeOverlaps | Compute overlap encodings |
encodeOverlaps-method | Compute overlap encodings |
encodeOverlaps1 | Compute overlap encodings |
encoding | OverlapEncodings objects |
encoding-method | OverlapEncodings objects |
end-method | GappedRanges objects |
end-method | Grouping objects |
end-method | List of IRanges and NormalIRanges |
end-method | Interval Search Trees |
end-method | Data on ranges |
end-method | Ranges objects |
end-method | List of Ranges |
end-method | Rle objects |
end-method | Views objects |
end-method | List of Views |
end<- | Ranges objects |
end<--method | IRanges and NormalIRanges objects |
end<--method | Data on ranges |
end<--method | List of Ranges |
end<--method | Views objects |
endoapply | Endomorphisms via application of a function over an object's elements |
endoapply-method | List objects |
endoapply-method | Data on ranges |
endoapply-method | Simple and Compressed List Classes |
endoapply-method | XVectorList objects |
endoapply-method | Endomorphisms via application of a function over an object's elements |
eval | List objects |
eval-method | Collection of Filter Rules |
eval-method | List objects |
evalSeparately | Collection of Filter Rules |
evalSeparately-method | Collection of Filter Rules |
expand | The expand method for uncompressing compressed data columns |
expand-method | The expand method for uncompressing compressed data columns |
Filter-method | Functional programming methods for List objects |
FilterRules | Collection of Filter Rules |
filterRules | Applying over spaces |
FilterRules-class | Collection of Filter Rules |
filterRules-method | Applying over spaces |
filterRules<- | Applying over spaces |
filterRules<--method | Applying over spaces |
Find-method | Functional programming methods for List objects |
findMatches | Comparing and ordering ranges |
findMatches-method | Comparing and ordering ranges |
findMatches-method | Finding overlapping ranges |
findOverlaps | Finding overlapping ranges |
findOverlaps-method | Finding overlapping ranges |
findOverlaps-methods | Finding overlapping ranges |
findRange | Rle objects |
findRange-method | Rle objects |
findRun | Rle objects |
findRun-method | Rle objects |
first | Ranges objects |
first-method | Ranges objects |
flank | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
flank-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
flippedQuery | OverlapEncodings objects |
flippedQuery-method | OverlapEncodings objects |
follow | Finding the nearest range neighbor |
follow-method | Finding the nearest range neighbor |
funprog-methods | Functional programming methods for List objects |
GappedRanges | GappedRanges objects |
GappedRanges-class | GappedRanges objects |
gaps | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
gaps-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
GroupedIRanges | XVectorList objects |
GroupedIRanges-class | XVectorList objects |
Grouping | Grouping objects |
Grouping-class | Grouping objects |
grouplength | Grouping objects |
grouplength-method | Grouping objects |
grouprank | Grouping objects |
grouprank-method | Grouping objects |
gsub-method | Lists of Atomic Vectors in Natural and Rle Form |
gsub-method | Rle objects |
H2LGrouping | Grouping objects |
H2LGrouping-class | Grouping objects |
head-method | The DataTable API |
head-method | Vector objects |
high2low | Grouping objects |
high2low-method | Grouping objects |
Hits | Set of hits between 2 vector-like objects |
hits | Mapping of ranges to another sequence |
Hits-class | Set of hits between 2 vector-like objects |
HitsList-class | List of Hits objects |
ifelse-method | Rle objects |
IntegerList | Lists of Atomic Vectors in Natural and Rle Form |
IntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
inter-range-methods | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
intersect-method | Set operations on IRanges, RangesList, and Hits objects |
IntervalTree | Interval Search Trees |
IntervalTree-class | Interval Search Trees |
intra-range-methods | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
IQR-method | Lists of Atomic Vectors in Natural and Rle Form |
IQR-method | Rle objects |
IRanges | The IRanges constructor and supporting functions |
IRanges-class | IRanges and NormalIRanges objects |
IRanges-constructor | The IRanges constructor and supporting functions |
IRanges-utils | IRanges utility functions |
IRangesList | List of IRanges and NormalIRanges |
IRangesList-class | List of IRanges and NormalIRanges |
is.na-method | Lists of Atomic Vectors in Natural and Rle Form |
is.na-method | The DataTable API |
is.na-method | Rle objects |
is.unsorted-method | Rle objects |
isConstant | Test if an atomic vector or array is constant |
isConstant-method | Test if an atomic vector or array is constant |
isDisjoint | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
isDisjoint-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
isEmpty | List objects |
isEmpty-method | IRanges and NormalIRanges objects |
isEmpty-method | List objects |
isEmpty-method | Ranges objects |
isEmpty-method | Simple and Compressed List Classes |
isNormal | Ranges objects |
isNormal-method | IRanges and NormalIRanges objects |
isNormal-method | List of IRanges and NormalIRanges |
isNormal-method | Ranges objects |
iteratorFun | Applying over spaces |
iteratorFun-method | Applying over spaces |
iteratorFun<- | Applying over spaces |
iteratorFun<--method | Applying over spaces |
lapply-method | Lists of Atomic Vectors in Natural and Rle Form |
lapply-method | List objects |
lapply-method | Data on ranges |
lapply-method | Simple and Compressed List Classes |
last | Ranges objects |
last-method | Ranges objects |
Lencoding | OverlapEncodings objects |
Lencoding-method | OverlapEncodings objects |
length-method | GappedRanges objects |
length-method | Grouping objects |
length-method | Set of hits between 2 vector-like objects |
length-method | Interval Search Trees |
length-method | MaskCollection objects |
length-method | OverlapEncodings objects |
length-method | Data on ranges |
length-method | Ranges objects |
length-method | Mapping of ranges to another sequence |
length-method | Rle objects |
length-method | Simple and Compressed List Classes |
length-method | Views objects |
length-method | XVector objects |
length-method | XVectorList objects |
length<--method | Grouping objects |
levels-method | OverlapEncodings objects |
levels-method | Rle objects |
levels<--method | Rle objects |
List | List objects |
List-class | List objects |
Lngap | OverlapEncodings objects |
Lngap-method | OverlapEncodings objects |
Loffset | OverlapEncodings objects |
Loffset-method | OverlapEncodings objects |
LogicalList | Lists of Atomic Vectors in Natural and Rle Form |
LogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
low2high | Grouping objects |
low2high-method | Grouping objects |
mad-method | Lists of Atomic Vectors in Natural and Rle Form |
mad-method | Rle objects |
map | Mapping of ranges to another sequence |
Map-method | Functional programming methods for List objects |
mapply-method | List objects |
Mask | MaskCollection objects |
MaskCollection | MaskCollection objects |
MaskCollection-class | MaskCollection objects |
MaskCollection.show_frame | MaskCollection objects |
maskedratio | MaskCollection objects |
maskedratio-method | MaskCollection objects |
maskedwidth | MaskCollection objects |
maskedwidth-method | MaskCollection objects |
match-method | Lists of Atomic Vectors in Natural and Rle Form |
match-method | Set of hits between 2 vector-like objects |
match-method | Comparing and ordering ranges |
match-method | Rle objects |
match-method | Finding overlapping ranges |
Math-method | Lists of Atomic Vectors in Natural and Rle Form |
Math-method | Rle objects |
Math2-method | Lists of Atomic Vectors in Natural and Rle Form |
Math2-method | Rle objects |
max-method | IRanges and NormalIRanges objects |
max-method | List of IRanges and NormalIRanges |
max-method | MaskCollection objects |
max-method | Utility functions and numeric summary of Views of numerics |
mcols | Vector objects |
mcols-method | Vector objects |
mcols<- | Vector objects |
mcols<--method | Vector objects |
mean-method | Lists of Atomic Vectors in Natural and Rle Form |
mean-method | Rle objects |
mean-method | Utility functions and numeric summary of Views of numerics |
median-method | Lists of Atomic Vectors in Natural and Rle Form |
median-method | Rle objects |
members | Grouping objects |
members-method | Grouping objects |
mendoapply | Endomorphisms via application of a function over an object's elements |
mendoapply-method | List objects |
mendoapply-method | Simple and Compressed List Classes |
mendoapply-method | Endomorphisms via application of a function over an object's elements |
merge-method | The DataTable API |
merge-method | List of Ranges |
metadata | Annotated class |
metadata-method | Annotated class |
metadata<- | Annotated class |
metadata<--method | Annotated class |
mid | Ranges objects |
mid-method | Ranges objects |
min-method | IRanges and NormalIRanges objects |
min-method | List of IRanges and NormalIRanges |
min-method | MaskCollection objects |
min-method | Utility functions and numeric summary of Views of numerics |
mseqapply | Apply function and cast to Vector |
mstack | Vector objects |
mstack-method | Vector objects |
multisplit | Split elements belonging to multiple groups |
na.exclude | The DataTable API |
na.exclude-method | The DataTable API |
na.omit | The DataTable API |
na.omit-method | The DataTable API |
names-method | GappedRanges objects |
names-method | Grouping objects |
names-method | IRanges and NormalIRanges objects |
names-method | MaskCollection objects |
names-method | Data on ranges |
names-method | Simple and Compressed List Classes |
names-method | Views objects |
names-method | XVectorList objects |
names<--method | GappedRanges objects |
names<--method | Grouping objects |
names<--method | IRanges and NormalIRanges objects |
names<--method | MaskCollection objects |
names<--method | Data on ranges |
names<--method | Simple and Compressed List Classes |
names<--method | Views objects |
names<--method | XVectorList objects |
narrow | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
narrow-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
nchar-method | Lists of Atomic Vectors in Natural and Rle Form |
nchar-method | Rle objects |
NCOL-method | The DataTable API |
ncol-method | External Data Frame |
ncol-method | List of DataFrames |
ncol-method | Data on ranges |
nearest | Finding the nearest range neighbor |
nearest-method | Finding the nearest range neighbor |
nearest-methods | Finding the nearest range neighbor |
newViews | Views objects |
ngap | GappedRanges objects |
ngap-method | GappedRanges objects |
ngap-method | OverlapEncodings objects |
nir_list | MaskCollection objects |
nir_list-method | MaskCollection objects |
nobj | Grouping objects |
nobj-method | Grouping objects |
NormalIRanges | IRanges and NormalIRanges objects |
NormalIRanges-class | IRanges and NormalIRanges objects |
NormalIRangesList | List of IRanges and NormalIRanges |
NormalIRangesList-class | List of IRanges and NormalIRanges |
NROW-method | The DataTable API |
NROW-method | Vector objects |
nrow-method | External Data Frame |
nrow-method | List of DataFrames |
nrow-method | Data on ranges |
nrun | Rle objects |
nrun-method | Rle objects |
NumericList | Lists of Atomic Vectors in Natural and Rle Form |
NumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
Ops-method | Lists of Atomic Vectors in Natural and Rle Form |
Ops-method | Rle objects |
Ops-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
order-method | Comparing and ordering ranges |
order-method | Rle objects |
OverlapEncodings | OverlapEncodings objects |
OverlapEncodings-class | OverlapEncodings objects |
overlapsAny | Finding overlapping ranges |
overlapsAny-method | Finding overlapping ranges |
params | Collection of Filter Rules |
params-method | Collection of Filter Rules |
Partitioning | Grouping objects |
Partitioning-class | Grouping objects |
PartitioningByEnd | Grouping objects |
PartitioningByEnd-class | Grouping objects |
PartitioningByWidth | Grouping objects |
PartitioningByWidth-class | Grouping objects |
paste-method | Rle objects |
pgap | Set operations on IRanges, RangesList, and Hits objects |
pgap-method | Set operations on IRanges, RangesList, and Hits objects |
pintersect | Set operations on IRanges, RangesList, and Hits objects |
pintersect-method | Set operations on IRanges, RangesList, and Hits objects |
pmap | Mapping of ranges to another sequence |
pmax-method | Lists of Atomic Vectors in Natural and Rle Form |
pmax-method | Rle objects |
pmax.int-method | Lists of Atomic Vectors in Natural and Rle Form |
pmax.int-method | Rle objects |
pmin-method | Lists of Atomic Vectors in Natural and Rle Form |
pmin-method | Rle objects |
pmin.int-method | Lists of Atomic Vectors in Natural and Rle Form |
pmin.int-method | Rle objects |
Position-method | Functional programming methods for List objects |
precede | Finding the nearest range neighbor |
precede-method | Finding the nearest range neighbor |
promoters | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
promoters-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
psetdiff | Set operations on IRanges, RangesList, and Hits objects |
psetdiff-method | Set operations on IRanges, RangesList, and Hits objects |
punion | Set operations on IRanges, RangesList, and Hits objects |
punion-method | Set operations on IRanges, RangesList, and Hits objects |
quantile-method | Lists of Atomic Vectors in Natural and Rle Form |
quantile-method | Rle objects |
queryHits | Set of hits between 2 vector-like objects |
queryHits-method | Set of hits between 2 vector-like objects |
queryHits-method | List of Hits objects |
queryHits-method | Mapping of ranges to another sequence |
queryLength | Set of hits between 2 vector-like objects |
queryLength-method | Set of hits between 2 vector-like objects |
range-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
rangeComparisonCodeToLetter | Comparing and ordering ranges |
RangedData | Data on ranges |
rangedData | Applying over spaces |
RangedData-class | Data on ranges |
rangedData-method | Applying over spaces |
rangedData<- | Applying over spaces |
rangedData<--method | Applying over spaces |
RangedDataList | Lists of RangedData |
RangedDataList-class | Lists of RangedData |
RangedSelection | Selection of ranges and columns |
RangedSelection-class | Selection of ranges and columns |
Ranges | Ranges objects |
ranges | Views objects |
Ranges-class | Ranges objects |
Ranges-comparison | Comparing and ordering ranges |
ranges-method | Lists of Atomic Vectors in Natural and Rle Form |
ranges-method | List of Hits objects |
ranges-method | Data on ranges |
ranges-method | Selection of ranges and columns |
ranges-method | Mapping of ranges to another sequence |
ranges-method | Rle objects |
ranges-method | Views objects |
ranges-method | List of Views |
ranges-method | Finding overlapping ranges |
ranges<- | Views objects |
ranges<--method | Data on ranges |
ranges<--method | Selection of ranges and columns |
ranges<--method | Views objects |
RangesList | List of Ranges |
RangesList-class | List of Ranges |
RangesList_encodeOverlaps | Compute overlap encodings |
RangesMapping-class | Mapping of ranges to another sequence |
RangesORmissing | Finding the nearest range neighbor |
RangesORmissing-class | Finding the nearest range neighbor |
rank-method | Comparing and ordering ranges |
RawList | Lists of Atomic Vectors in Natural and Rle Form |
RawList-class | Lists of Atomic Vectors in Natural and Rle Form |
rbind-method | External Data Frame |
rbind-method | List of DataFrames |
rbind-method | The DataTable API |
rbind-method | Data on ranges |
rdapply | Applying over spaces |
rdapply-method | Applying over spaces |
RDApplyParams | Applying over spaces |
RDApplyParams-class | Applying over spaces |
read.agpMask | Read a mask from a file |
read.gapMask | Read a mask from a file |
read.liftMask | Read a mask from a file |
read.Mask | Read a mask from a file |
read.rmMask | Read a mask from a file |
read.trfMask | Read a mask from a file |
reduce | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
Reduce-method | Functional programming methods for List objects |
reduce-method | Inter range transformations of a Ranges, Views, RangesList, MaskCollection, or RangedData object |
reducerFun | Applying over spaces |
reducerFun-method | Applying over spaces |
reducerFun<- | Applying over spaces |
reducerFun<--method | Applying over spaces |
reducerParams | Applying over spaces |
reducerParams-method | Applying over spaces |
reducerParams<- | Applying over spaces |
reducerParams<--method | Applying over spaces |
reflect | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
reflect-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
relist-method | List objects |
remapHits | Set of hits between 2 vector-like objects |
rename | Vector objects |
rename-method | Vector objects |
Rencoding | OverlapEncodings objects |
Rencoding-method | OverlapEncodings objects |
rep-method | Rle objects |
rep-method | Vector objects |
rep.int-method | Rle objects |
rep.int-method | Vector objects |
resize | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
resize-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
restrict | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
restrict-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
rev-method | Rle objects |
rev-method | Vector objects |
rev-method | reverse |
revElements | List objects |
revElements-method | List objects |
revElements-method | Simple and Compressed List Classes |
reverse | reverse |
reverse-method | reverse |
Rle | Rle objects |
Rle-class | Rle objects |
Rle-method | Rle objects |
RleList | Lists of Atomic Vectors in Natural and Rle Form |
RleList-class | Lists of Atomic Vectors in Natural and Rle Form |
RleList-method | Lists of Atomic Vectors in Natural and Rle Form |
RleViews | The RleViews class |
RleViews-class | The RleViews class |
RleViewsList | List of RleViews |
RleViewsList-class | List of RleViews |
Rngap | OverlapEncodings objects |
Rngap-method | OverlapEncodings objects |
Roffset | OverlapEncodings objects |
Roffset-method | OverlapEncodings objects |
rownames-method | External Data Frame |
rownames-method | List of DataFrames |
rownames-method | Data on ranges |
rownames<--method | External Data Frame |
rownames<--method | List of DataFrames |
rownames<--method | Data on ranges |
runLength | Rle objects |
runLength-method | Lists of Atomic Vectors in Natural and Rle Form |
runLength-method | Rle objects |
runLength<- | Rle objects |
runLength<--method | Rle objects |
runmean | Fixed width running window summaries across vector-like objects |
runmean-method | Lists of Atomic Vectors in Natural and Rle Form |
runmean-method | Rle objects |
runmed-method | Lists of Atomic Vectors in Natural and Rle Form |
runmed-method | Rle objects |
runq | Fixed width running window summaries across vector-like objects |
runq-method | Lists of Atomic Vectors in Natural and Rle Form |
runq-method | Rle objects |
runstat | Fixed width running window summaries across vector-like objects |
runsum | Fixed width running window summaries across vector-like objects |
runsum-method | Lists of Atomic Vectors in Natural and Rle Form |
runsum-method | Rle objects |
runValue | Rle objects |
runValue-method | Lists of Atomic Vectors in Natural and Rle Form |
runValue-method | Rle objects |
runValue<- | Rle objects |
runValue<--method | Rle objects |
runwtsum | Fixed width running window summaries across vector-like objects |
runwtsum-method | Lists of Atomic Vectors in Natural and Rle Form |
runwtsum-method | Rle objects |
safeExplode | Low-level string utilities |
sapply-method | List objects |
score | Score accessor and setter |
score-method | Data on ranges |
score<- | Score accessor and setter |
score<--method | Data on ranges |
sd-method | Lists of Atomic Vectors in Natural and Rle Form |
sd-method | Rle objects |
seqapply | Apply function and cast to Vector |
seqby | Apply function and cast to Vector |
seqselect | Vector objects |
seqselect-method | External Data Frame |
seqselect-method | The DataTable API |
seqselect-method | GappedRanges objects |
seqselect-method | IRanges and NormalIRanges objects |
seqselect-method | Data on ranges |
seqselect-method | Rle objects |
seqselect-method | Simple and Compressed List Classes |
seqselect-method | Vector objects |
seqselect-method | XVector objects |
seqselect-method | XVectorList objects |
seqselect<- | Vector objects |
seqselect<--method | Lists of Atomic Vectors in Natural and Rle Form |
seqselect<--method | The DataTable API |
seqselect<--method | IRanges and NormalIRanges objects |
seqselect<--method | Data on ranges |
seqselect<--method | Rle objects |
seqselect<--method | Simple and Compressed List Classes |
seqselect<--method | Vector objects |
seqsplit | Apply function and cast to Vector |
setdiff-method | Set operations on IRanges, RangesList, and Hits objects |
setops-methods | Set operations on IRanges, RangesList, and Hits objects |
shift | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
shift-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
shiftApply | Vector objects |
shiftApply-method | Rle objects |
shiftApply-method | Vector objects |
show-method | Lists of Atomic Vectors in Natural and Rle Form |
show-method | List of DataFrames |
show-method | The DataTable API |
show-method | Collection of Filter Rules |
show-method | GappedRanges objects |
show-method | Grouping objects |
show-method | Set of hits between 2 vector-like objects |
show-method | List objects |
show-method | MaskCollection objects |
show-method | OverlapEncodings objects |
show-method | Data on ranges |
show-method | Ranges objects |
show-method | List of Ranges |
show-method | Rle objects |
show-method | The RleViews class |
show-method | The XDoubleViews class |
show-method | The XIntegerViews class |
show-method | XVector objects |
show-method | XVectorList objects |
SimpleAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleComplexList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleDataFrameList-class | List of DataFrames |
SimpleIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleIRangesList | List of IRanges and NormalIRanges |
SimpleIRangesList-class | List of IRanges and NormalIRanges |
SimpleList | Simple and Compressed List Classes |
SimpleList-class | Simple and Compressed List Classes |
SimpleLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleNormalIRangesList | List of IRanges and NormalIRanges |
SimpleNormalIRangesList-class | List of IRanges and NormalIRanges |
SimpleNumericList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRangesList | List of Ranges |
SimpleRangesList-class | List of Ranges |
SimpleRawList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleList | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
SimpleRleViewsList-class | List of RleViews |
SimpleSplitDataFrameList-class | List of DataFrames |
SimpleViewsList | List of Views |
SimpleViewsList-class | List of Views |
simplify | Applying over spaces |
simplify-method | Applying over spaces |
simplify<- | Applying over spaces |
simplify<--method | Applying over spaces |
slice | Utility functions and numeric summary of Views of numerics |
slice-method | Utility functions and numeric summary of Views of numerics |
smoothEnds-method | Lists of Atomic Vectors in Natural and Rle Form |
smoothEnds-method | Rle objects |
solveUserSEW | The IRanges constructor and supporting functions |
solveUserSEW0 | The IRanges constructor and supporting functions |
sort-method | Lists of Atomic Vectors in Natural and Rle Form |
sort-method | Rle objects |
sort-method | Vector objects |
space | List of Ranges |
space-method | List of Hits objects |
space-method | Data on ranges |
space-method | List of Ranges |
space-method | Mapping of ranges to another sequence |
split-method | Data on ranges |
split-method | Vector objects |
split<--method | Vector objects |
SplitDataFrameList | List of DataFrames |
SplitDataFrameList-class | List of DataFrames |
splitRanges | Rle objects |
splitRanges-method | Rle objects |
stack-method | List of DataFrames |
stack-method | List objects |
stack-method | Lists of RangedData |
start-method | GappedRanges objects |
start-method | Grouping objects |
start-method | IRanges and NormalIRanges objects |
start-method | List of IRanges and NormalIRanges |
start-method | Interval Search Trees |
start-method | Data on ranges |
start-method | Ranges objects |
start-method | List of Ranges |
start-method | Rle objects |
start-method | Views objects |
start-method | List of Views |
start<- | Ranges objects |
start<--method | IRanges and NormalIRanges objects |
start<--method | Data on ranges |
start<--method | List of Ranges |
start<--method | Views objects |
strsplitAsListOfIntegerVectors | Low-level string utilities |
sub-method | Lists of Atomic Vectors in Natural and Rle Form |
sub-method | Rle objects |
subject | Views objects |
subject-method | List of RleViews |
subject-method | Views objects |
subjectHits | Set of hits between 2 vector-like objects |
subjectHits-method | Set of hits between 2 vector-like objects |
subjectHits-method | List of Hits objects |
subjectHits-method | Mapping of ranges to another sequence |
subjectLength | Set of hits between 2 vector-like objects |
subjectLength-method | Set of hits between 2 vector-like objects |
subseq | XVector objects |
subseq-method | XVector objects |
subseq-method | XVectorList objects |
subseq<- | XVector objects |
subseq<--method | XVector objects |
subset-method | The DataTable API |
subset-method | Vector objects |
subsetByFilter | Collection of Filter Rules |
subsetByFilter-method | Collection of Filter Rules |
subsetByOverlaps | Finding overlapping ranges |
subsetByOverlaps-method | Finding overlapping ranges |
substr-method | Rle objects |
substring-method | Rle objects |
subviews | Views objects |
subviews-method | Views objects |
successiveIRanges | IRanges utility functions |
successiveViews | Views objects |
sum-method | Lists of Atomic Vectors in Natural and Rle Form |
sum-method | Utility functions and numeric summary of Views of numerics |
Summary-method | Lists of Atomic Vectors in Natural and Rle Form |
Summary-method | Rle objects |
Summary-method | Utility functions and numeric summary of Views of numerics |
summary-method | Collection of Filter Rules |
summary-method | List of IRanges and NormalIRanges |
summary-method | Rle objects |
svn.time | Low-level string utilities |
t-method | Set of hits between 2 vector-like objects |
t-method | List of Hits objects |
table-method | Lists of Atomic Vectors in Natural and Rle Form |
table-method | Rle objects |
tail-method | The DataTable API |
tail-method | Vector objects |
tapply-method | Vector objects |
threebands | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
threebands-method | Intra range transformations of a Ranges, Views, RangesList, MaskCollection, or XVectorList object |
tofactor | Grouping objects |
togroup | Grouping objects |
togroup-method | Grouping objects |
togrouplength | Grouping objects |
togrouplength-method | Grouping objects |
togrouprank | Grouping objects |
togrouprank-method | Grouping objects |
tolower-method | Lists of Atomic Vectors in Natural and Rle Form |
tolower-method | Rle objects |
toupper-method | Lists of Atomic Vectors in Natural and Rle Form |
toupper-method | Rle objects |
trim | Views objects |
trim-method | Views objects |
tseqapply | Apply function and cast to Vector |
union-method | Set operations on IRanges, RangesList, and Hits objects |
unique-method | Lists of Atomic Vectors in Natural and Rle Form |
unique-method | The DataTable API |
unique-method | Rle objects |
unique-method | Vector objects |
universe | List of Ranges |
universe-method | Data on ranges |
universe-method | List of Ranges |
universe-method | List of Views |
universe<- | List of Ranges |
universe<--method | Data on ranges |
universe<--method | List of Ranges |
universe<--method | List of Views |
unlist-method | List of IRanges and NormalIRanges |
unlist-method | List objects |
unlist-method | Lists of RangedData |
unlist-method | Ranges objects |
unlist-method | Simple and Compressed List Classes |
unlist_list_of_XVectorList | XVectorList objects |
unsplit-method | List objects |
unsplit_list_of_XVectorList | XVectorList objects |
update-method | IRanges and NormalIRanges objects |
update-method | Ranges objects |
updateObject-method | Update an object of a class defined in IRanges to its current class definition |
updateObject-methods | Update an object of a class defined in IRanges to its current class definition |
values | Vector objects |
values-method | Data on ranges |
values-method | Vector objects |
values<- | Vector objects |
values<--method | Data on ranges |
values<--method | Vector objects |
var-method | Lists of Atomic Vectors in Natural and Rle Form |
var-method | Rle objects |
Vector | Vector objects |
Vector-class | Vector objects |
viewApply | Utility functions and numeric summary of Views of numerics |
viewApply-method | Utility functions and numeric summary of Views of numerics |
viewMaxs | Utility functions and numeric summary of Views of numerics |
viewMaxs-method | Utility functions and numeric summary of Views of numerics |
viewMeans | Utility functions and numeric summary of Views of numerics |
viewMeans-method | Utility functions and numeric summary of Views of numerics |
viewMins | Utility functions and numeric summary of Views of numerics |
viewMins-method | Utility functions and numeric summary of Views of numerics |
viewRangeMaxs | Utility functions and numeric summary of Views of numerics |
viewRangeMaxs-method | Utility functions and numeric summary of Views of numerics |
viewRangeMins | Utility functions and numeric summary of Views of numerics |
viewRangeMins-method | Utility functions and numeric summary of Views of numerics |
Views | Views objects |
Views-class | Views objects |
Views-method | The RleViews class |
Views-method | List of RleViews |
Views-method | The XDoubleViews class |
Views-method | The XIntegerViews class |
Views-utils | Utility functions and numeric summary of Views of numerics |
ViewsList | List of Views |
ViewsList-class | List of Views |
viewSums | Utility functions and numeric summary of Views of numerics |
viewSums-method | Utility functions and numeric summary of Views of numerics |
viewWhichMaxs | Utility functions and numeric summary of Views of numerics |
viewWhichMaxs-method | Utility functions and numeric summary of Views of numerics |
viewWhichMins | Utility functions and numeric summary of Views of numerics |
viewWhichMins-method | Utility functions and numeric summary of Views of numerics |
vmembers | Grouping objects |
vmembers-method | Grouping objects |
which-method | Lists of Atomic Vectors in Natural and Rle Form |
which-method | Rle objects |
which.max-method | Lists of Atomic Vectors in Natural and Rle Form |
which.max-method | Rle objects |
which.max-method | Utility functions and numeric summary of Views of numerics |
which.min-method | Lists of Atomic Vectors in Natural and Rle Form |
which.min-method | Utility functions and numeric summary of Views of numerics |
whichAsIRanges | IRanges utility functions |
whichFirstNotNormal | Ranges objects |
whichFirstNotNormal-method | List of IRanges and NormalIRanges |
whichFirstNotNormal-method | Ranges objects |
width | Ranges objects |
width-method | Grouping objects |
width-method | IRanges and NormalIRanges objects |
width-method | List of IRanges and NormalIRanges |
width-method | MaskCollection objects |
width-method | Data on ranges |
width-method | Ranges objects |
width-method | List of Ranges |
width-method | Rle objects |
width-method | Views objects |
width-method | List of Views |
width-method | XVectorList objects |
width<- | Ranges objects |
width<--method | IRanges and NormalIRanges objects |
width<--method | Data on ranges |
width<--method | List of Ranges |
width<--method | Views objects |
window-method | The DataTable API |
window-method | GappedRanges objects |
window-method | IRanges and NormalIRanges objects |
window-method | Rle objects |
window-method | Vector objects |
window-method | XVector objects |
window-method | XVectorList objects |
window<--method | The DataTable API |
window<--method | Data on ranges |
window<--method | Vector objects |
with-method | List objects |
within-method | List objects |
within-method | Data on ranges |
XDouble | XVector objects |
XDouble-class | XVector objects |
XDoubleViews | The XDoubleViews class |
XDoubleViews-class | The XDoubleViews class |
XInteger | XVector objects |
XInteger-class | XVector objects |
XIntegerViews | The XIntegerViews class |
XIntegerViews-class | The XIntegerViews class |
XNumeric | XVector objects |
XRaw | XVector objects |
XRaw-class | XVector objects |
XRawList | XRawList objects |
XRawList-class | XRawList objects |
xtabs-method | Statistical modeling with DataTable |
xvcopy | Object compaction |
xvcopy-method | Object compaction |
XVector | XVector objects |
XVector-class | XVector objects |
XVectorList | XVectorList objects |
XVectorList-class | XVectorList objects |
!-method | Lists of Atomic Vectors in Natural and Rle Form |
!-method | Rle objects |
!=-method | Vector objects |
$-method | List objects |
$<--method | Data on ranges |
$<--method | Simple and Compressed List Classes |
%in%-method | Lists of Atomic Vectors in Natural and Rle Form |
%in%-method | Comparing and ordering ranges |
%in%-method | Rle objects |
%in%-method | Vector objects |
%in%-method | Finding overlapping ranges |
%over% | Finding overlapping ranges |
%within% | Finding overlapping ranges |
<-method | Vector objects |
<=-method | Comparing and ordering ranges |
==-method | Comparing and ordering ranges |
==-method | The XDoubleViews class |
==-method | The XIntegerViews class |
==-method | XVector objects |
>-method | Vector objects |
>=-method | Vector objects |
[-method | External Data Frame |
[-method | List of DataFrames |
[-method | Collection of Filter Rules |
[-method | GappedRanges objects |
[-method | Set of hits between 2 vector-like objects |
[-method | IRanges and NormalIRanges objects |
[-method | List of IRanges and NormalIRanges |
[-method | MaskCollection objects |
[-method | Data on ranges |
[-method | Ranges objects |
[-method | List of Ranges |
[-method | Rle objects |
[-method | Simple and Compressed List Classes |
[-method | Vector objects |
[-method | Views objects |
[-method | XVector objects |
[-method | XVectorList objects |
[<--method | External Data Frame |
[<--method | List of DataFrames |
[<--method | IRanges and NormalIRanges objects |
[<--method | Data on ranges |
[<--method | Rle objects |
[<--method | Simple and Compressed List Classes |
[<--method | Vector objects |
[<--method | XVectorList objects |
[[-method | External Data Frame |
[[-method | GappedRanges objects |
[[-method | Grouping objects |
[[-method | List of IRanges and NormalIRanges |
[[-method | List objects |
[[-method | MaskCollection objects |
[[-method | Data on ranges |
[[-method | Ranges objects |
[[-method | Simple and Compressed List Classes |
[[-method | Views objects |
[[-method | XVectorList objects |
[[<--method | External Data Frame |
[[<--method | Collection of Filter Rules |
[[<--method | Data on ranges |
[[<--method | Simple and Compressed List Classes |
[[<--method | XVectorList objects |