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DIAScoring Member List

This is the complete list of members for DIAScoring, including all inherited members.

check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dia_by_ion_score(SpectrumType spectrum, AASequence &sequence, int charge, double &bseries_score, double &yseries_score)DIAScoring
dia_byseries_intensity_min_DIAScoringprivate
dia_byseries_ppm_diff_DIAScoringprivate
dia_centroided_DIAScoringprivate
dia_extract_window_DIAScoringprivate
dia_isotope_scores(const std::vector< TransitionType > &transitions, SpectrumType spectrum, OpenSwath::IMRMFeature *mrmfeature, double &isotope_corr, double &isotope_overlap)DIAScoring
dia_massdiff_score(const std::vector< TransitionType > &transitions, SpectrumType spectrum, const std::vector< double > &normalized_library_intensity, double &ppm_score, double &ppm_score_weighted)DIAScoring
dia_nr_charges_DIAScoringprivate
dia_nr_isotopes_DIAScoringprivate
diaIsotopeScoresSub_(const std::vector< TransitionType > &transitions, SpectrumType spectrum, std::map< std::string, double > &intensities, double &isotope_corr, double &isotope_overlap)DIAScoringprivate
DIAScoring()DIAScoring
DIAScoring(const DIAScoring &rhs)DIAScoringprivate
error_name_DefaultParamHandlerprotected
getDefaults() const DefaultParamHandler
getFirstIsotopeRelativeIntensities_(const std::vector< TransitionType > &transitions, OpenSwath::IMRMFeature *mrmfeature, std::map< std::string, double > &intensities)DIAScoringprivate
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
largePeaksBeforeFirstIsotope_(double product_mz, SpectrumType &spectrum, double max_ppm_diff, double main_peak)DIAScoringprivate
operator=(const DIAScoring &rhs)DIAScoringprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PeptideType typedefDIAScoringprivate
ProteinType typedefDIAScoringprivate
score_with_isotopes(SpectrumType spectrum, const std::vector< TransitionType > &transitions, double &dotprod, double &manhattan)DIAScoring
scoreIsotopePattern_(double product_mz, const std::vector< double > &isotopes_int, int putative_fragment_charge)DIAScoringprivate
set_dia_parameters(double dia_extract_window, double dia_centroided, double dia_byseries_intensity_min, double dia_byseries_ppm_diff, double dia_nr_isotopes, double dia_nr_charges)DIAScoring
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
SpectrumType typedefDIAScoringprivate
subsections_DefaultParamHandlerprotected
TransitionType typedefDIAScoringprivate
updateMembers_()DIAScoringprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~DIAScoring()DIAScoringinlinevirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5