Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
MzTabFile Member List

This is the complete list of members for MzTabFile, including all inherited members.

createProteinToPeptideLinks_(const std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, MapAccPepType &map_run_accession_to_pephits)MzTabFileprotectedstatic
extractNumberOfSubSamples_(const std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids)MzTabFileprotectedstatic
extractNumPeptides_(const String &common_identifier, const String &protein_accession, const MapAccPepType &map_run_accesion_to_peptides)MzTabFileprotectedstatic
extractNumPeptidesDistinct_(String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides)MzTabFileprotectedstatic
extractNumPeptidesUnambiguous_(String common_identifier, String protein_accession, const MapAccPepType &map_run_accesion_to_peptides)MzTabFileprotectedstatic
extractPeptideModifications_(const PeptideHit &peptide_hit)MzTabFileprotectedstatic
extractProteinAccession_(const PeptideHit &peptide_hit)MzTabFileprotectedstatic
generateMzTabMetaDataSection_(const MzTabMetaData &map, StringList &sl) const MzTabFileprotected
generateMzTabPeptideHeader_(Int n_subsamples, const std::vector< String > &optional_protein_columns) const MzTabFileprotected
generateMzTabPeptideSection_(const MzTabPeptideSectionData &map, StringList &sl) const MzTabFileprotected
generateMzTabPeptideSectionRow_(const MzTabPeptideSectionRow &row, const String &unit_id) const MzTabFileprotected
generateMzTabProteinHeader_(Int n_subsamples, const std::vector< String > &optional_protein_columns) const MzTabFileprotected
generateMzTabProteinSection_(const MzTabProteinSectionData &map, StringList &sl) const MzTabFileprotected
generateMzTabProteinSectionRow_(const MzTabProteinSectionRow &row, const String &unit_id) const MzTabFileprotected
generateMzTabSmallMoleculeHeader_(Int n_subsamples, const std::vector< String > &optional_smallmolecule_columns) const MzTabFileprotected
generateMzTabSmallMoleculeSection_(const MzTabSmallMoleculeSectionData &map, StringList &sl) const MzTabFileprotected
generateMzTabSmallMoleculeSectionRow_(const MzTabSmallMoleculeSectionRow &row, const String &unit_id) const MzTabFileprotected
keepFirstPSM_(std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end)MzTabFileprotectedstatic
load(const String &filename, MzTab &mz_tab)MzTabFile
MapAccPepType typedefMzTabFile
mapSearchEngineScoreToCvParam_(const String &openms_search_engine_name, DoubleReal score, String score_type)MzTabFileprotectedstatic
mapSearchEngineToCvParam_(const String &openms_search_engine_name)MzTabFileprotectedstatic
MzTabFile()MzTabFile
partitionIntoRuns_(const std::vector< PeptideIdentification > &pep_ids, const std::vector< ProteinIdentification > &pro_ids, std::map< String, std::vector< PeptideIdentification > > &map_run_to_pepids, std::map< String, std::vector< ProteinIdentification > > &map_run_to_proids)MzTabFileprotectedstatic
sortPSM_(std::vector< PeptideIdentification >::iterator begin, std::vector< PeptideIdentification >::iterator end)MzTabFileprotectedstatic
store(const String &filename, const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, String in, String document_id) const MzTabFile
store(const String &filename, const MzTab &mz_tab) const MzTabFile
writePeptideHeader_(SVOutStream &output, std::map< String, Size > n_sub_samples)MzTabFileprotectedstatic
writeProteinData_(SVOutStream &output, const ProteinIdentification &prot_id, Size run_count, String input_filename, bool has_coverage, const MapAccPepType &map_run_accesion_to_peptides, const std::map< String, Size > &map_run_to_num_sub)MzTabFileprotectedstatic
writeProteinHeader_(SVOutStream &output, std::map< String, Size > n_sub_samples)MzTabFileprotectedstatic
~MzTabFile()MzTabFile

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:31 using doxygen 1.8.5