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s_ :
SuffixArraySeqan
,
SuffixArrayTrypticCompressed
s_bion :
CompNovoIonScoringBase::IonScore
s_byteorder_ :
MzXMLHandler< MapType >
s_centroided_ :
MzXMLHandler< MapType >
s_chargedeconvoluted_ :
MzXMLHandler< MapType >
s_completiontime_ :
MzXMLHandler< MapType >
s_compressionType_ :
MzXMLHandler< MapType >
s_count_ :
MzXMLHandler< MapType >
s_deisotoped_ :
MzXMLHandler< MapType >
s_email_ :
MzXMLHandler< MapType >
s_endmz_ :
MzXMLHandler< MapType >
s_filename_ :
MzXMLHandler< MapType >
s_filesha1_ :
MzXMLHandler< MapType >
s_filetype_ :
MzXMLHandler< MapType >
s_first_ :
MzXMLHandler< MapType >
s_intensitycutoff_ :
MzXMLHandler< MapType >
s_isotope_pattern_1 :
CompNovoIonScoringBase::IonScore
s_isotope_pattern_2 :
CompNovoIonScoringBase::IonScore
s_last_ :
MzXMLHandler< MapType >
s_mslevel_ :
MzXMLHandler< MapType >
s_name_ :
MzXMLHandler< MapType >
s_num_ :
MzXMLHandler< MapType >
s_pairorder_ :
MzXMLHandler< MapType >
s_peakscount_ :
MzXMLHandler< MapType >
s_phone_ :
MzXMLHandler< MapType >
s_polarity_ :
MzXMLHandler< MapType >
s_precision_ :
MzXMLHandler< MapType >
s_precursorcharge_ :
MzXMLHandler< MapType >
s_precursorintensity_ :
MzXMLHandler< MapType >
s_retentiontime_ :
MzXMLHandler< MapType >
s_scantype_ :
MzXMLHandler< MapType >
s_startmz_ :
MzXMLHandler< MapType >
s_type_ :
MzXMLHandler< MapType >
s_uri_ :
MzXMLHandler< MapType >
s_value_ :
MzXMLHandler< MapType >
s_version_ :
MzXMLHandler< MapType >
s_windowwideness_ :
MzXMLHandler< MapType >
s_witness :
CompNovoIonScoringBase::IonScore
s_yion :
CompNovoIonScoringBase::IonScore
sa_ :
SuffixArrayPeptideFinder
sample_ :
ExperimentalSettings
sample_processing :
MzTabUnitIdMetaData
sample_rate_ :
ElutionPeakDetection
samplecomment_ :
SampleVisualizer
sampleconcentration_ :
SampleVisualizer
samplemass_ :
SampleVisualizer
samplename_ :
SampleVisualizer
samplenumber_ :
SampleVisualizer
sampleorganism_ :
SampleVisualizer
samples_ :
MzMLHandler< MapType >
samplestate_ :
SampleVisualizer
samplevolume_ :
SampleVisualizer
sampling_points_per_FWHM_ :
RawMSSignalSimulation
saveallbutton_ :
MetaDataBrowser
sc_charge_ :
ProtonDistributionModel
sc_charge_full_ :
ProtonDistributionModel
sc_charge_ion_c_term_ :
ProtonDistributionModel
sc_charge_ion_n_term_ :
ProtonDistributionModel
scale_ :
PeakPickerCWT
,
EuclideanSimilarity
,
LinearInterpolation< Key, Value >
,
ProductModel< 2 >
,
ContinuousWaveletTransform
scale_0_ :
BilinearInterpolation< Key, Value >
scale_1_ :
BilinearInterpolation< Key, Value >
scale_factor_ :
LmaGaussFitter1D
,
LmaGaussModel
scaling_ :
InterpolationModel
scaling_lower :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
scaling_upper :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
SCAN :
MSPeak
scan :
PSLPFormulation::IndexTriple
,
MS1Signal
,
MS2Fragment
scan_apex :
SHFeature
scan_dir_ :
MassAnalyzerVisualizer
scan_direction_ :
MassAnalyzer
SCAN_END :
MS2Info
scan_end :
SHFeature
scan_law_ :
MassAnalyzer
,
MassAnalyzerVisualizer
scan_map_ :
PepXMLFile
scan_mode_ :
InstrumentSettings
scan_rate_ :
MassAnalyzer
,
MassAnalyzerVisualizer
scan_regex_ :
MascotXMLHandler
SCAN_START :
MS2Info
scan_start :
SHFeature
scan_time_ :
MassTrace
,
MassAnalyzer
,
MassAnalyzerVisualizer
scan_windows_ :
InstrumentSettings
scanEnd :
MS2Fragment
scans :
IsotopeCluster
scanStart :
MS2Fragment
scanTRIndex_ :
SuperHirnParameters
scene_ :
TOPPASWidget
schema_location_ :
XMLFile
schema_version_ :
XMLFile
scope_path_ :
CVMappingRule
SCORE :
MSPeak
score :
CompNovoIonScoringBase::IonScore
,
DeNovoIonScoring::IonScore
,
FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType >::BoxElement
,
cudaHelp
,
IsotopeWaveletTransform< PeakType >::BoxElement
,
RNPxlReportRow
score_ :
CompNovoIdentificationBase::Permut
,
ChargePair
,
PeptideHit
,
ProteinHit
,
DeconvPeak
score_clas_pairs_ :
ROCCurve
SCORE_HOLDER :
SHFeature
score_threshold_ :
MapAlignmentAlgorithmIdentification
score_type_ :
InspectOutfile
,
PeptideIdentification
,
PeptideIdentificationVisualizer
,
ProteinIdentificationVisualizer
scoredistribution_ :
MapAlignmentAlgorithmSpectrumAlignment
scorer_ :
PILISIdentification
scores_ :
IsotopeWaveletTransform< PeakType >
sd_err_left_ :
TransformationModelBSpline
sd_err_right_ :
TransformationModelBSpline
search_engine :
MzTabSmallMoleculeSectionRow
,
MzTabProteinSectionRow
,
MzTabPeptideSectionRow
search_engine_ :
PepXMLFile
,
ProteinIdentification
search_engine_score :
MzTabProteinSectionRow
,
MzTabPeptideSectionRow
,
MzTabSmallMoleculeSectionRow
search_engine_version_ :
ProteinIdentification
search_id_ :
PepXMLFile
search_param_ :
ConsensusXMLFile
,
FeatureXMLFile
search_parameters_ :
MascotXMLHandler
,
ProteinIdentification
search_string_ :
DBOpenDialog
search_title_ :
MascotInfile
search_type_ :
MascotInfile
second :
ProbablePhosphoSites
second_nearest_gap_ :
StablePairFinder
secondary_types :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
seeds_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
seen_experiment_ :
PepXMLFile
selected_ :
Annotation1DItem
,
MultiGradientSelector
selected_activation_ :
IsobaricChannelExtractor
selected_color_ :
MultiGradientSelector
selected_ion_count_ :
MzMLHandler< MapType >
selected_labels :
SILACAnalyzer
selected_peak_ :
Spectrum2DCanvas
,
SpectrumCanvas
selected_pen_ :
Annotations1DContainer
semi_cleavage_ :
XTandemInfile
sep_ :
CSVWriter
,
MzTabStringList
,
SVOutStream
sep_indices_ :
BigString
separator_ :
BigString
seq_1 :
ProbablePhosphoSites
seq_2 :
ProbablePhosphoSites
sequence :
PILISCrossValidation::Peptide
,
LightPeptide
,
LightProtein
,
Peptide
,
Protein
,
ProteinResolver::PeptideEntry
,
Protein
,
Peptide
,
FASTAFile::FASTAEntry
,
MzTabPeptideSectionRow
sequence_ :
IMSElement
,
PeptideHit
,
ProteinHit
sequence_header_filter_ :
SequestInfile
sequence_string_ :
AASequence
sequences :
SVMData
sequences_ :
PrecursorIonSelectionPreprocessing
server_path_ :
MascotRemoteQuery
set :
EGHFitter1D::Data
,
EmgFitter1D::Data
,
LmaGaussFitter1D::Data
,
LmaIsotopeFitter1D::Data
set_Name_ID_map_ :
QcMLFile
set_to_zero_ :
ParentPeakMower
setQualityAts_ :
QcMLFile
setQualityQPs_ :
QcMLFile
setQualityQPs_members_ :
QcMLFile
sf :
RawMSSignalSimulation::ContaminantInfo
sfIsoDist10 :
IsotopicDist
sfIsoDist50 :
IsotopicDist
sfIsoDist90 :
IsotopicDist
sfIsoMass10 :
IsotopicDist
sfIsoMass50 :
IsotopicDist
sfIsoMass90 :
IsotopicDist
sfMassStep :
IsotopicDist
sfMaxIsotopeIndex :
IsotopicDist
sfMaxMass :
IsotopicDist
sfMaxMassIndex :
IsotopicDist
sfMinMass :
IsotopicDist
sfNrIsotopes :
IsotopicDist
sgolay_frame_length_ :
MRMTransitionGroupPicker
sgolay_polynomial_order_ :
MRMTransitionGroupPicker
shape :
RawMSSignalSimulation::ContaminantInfo
short_name_ :
Residue
show_alignment_ :
Spectrum1DCanvas
show_fragment_ions_ :
SequestInfile
show_grid_ :
SpectrumCanvas
show_legend_ :
AxisWidget
show_splitters_ :
HistogramWidget
show_timing_ :
SpectrumCanvas
sigma :
GaussFitter::GaussFitResult
,
LmaIsotopeFitter1D::Data
sigma_ :
SVMWrapper
,
PrecursorIonSelectionPreprocessing
,
GaussFilterAlgorithm
,
GaussTraceFitter< PeakType >
,
IsotopeWaveletTransform< PeakType >
sigma_5_bound_ :
EGHTraceFitter< PeakType >
sigma_square_ :
EGHFitter1D
,
EGHModel
,
EGHTraceFitter< PeakType >
sigma_square_2_ :
EGHModel
sigmas_ :
SVMWrapper
signal :
OptimizePeakDeconvolution::Data
,
OptimizePick::Data
,
TwoDOptimization::Data
signal2D :
TwoDOptimization::Data
signal_ :
ContinuousWaveletTransform
signal_length_ :
ContinuousWaveletTransform
signal_to_noise :
PeakShape
signal_to_noise_ :
MRMTransitionGroupPicker
,
PeakPickerCWT
,
PeakPickerHiRes
signal_weight :
PSLPFormulation::IndexTriple
SignalToNoise :
MSPeak
,
SHFeature
signalToNoise_ :
CentroidPeak
significance_threshold_ :
PeptideIdentification
SILAClabels :
SILACAnalyzer
sim_specs_ :
PILISIdentification
simulators_ :
SvmTheoreticalSpectrumGeneratorSet
sine_table_ :
IsotopeWavelet
singleMass_ :
Adduct
singletonRegistryInstance_ :
SingletonRegistry
sites_ :
UnimodXMLHandler
size :
MzMLHandler< MapType >::BinaryData
SIZE :
IMSIsotopeDistribution
size :
ConsensusMap::FileDescription
size_ :
SparseVector< Value >
,
TransformationModelInterpolated
,
TransformationModelBSpline
size_only_ :
FeatureXMLFile
,
FeatureFileOptions
size_proportions_ :
SaveImageDialog
size_ratio_ :
SaveImageDialog
size_x_ :
SaveImageDialog
size_y_ :
SaveImageDialog
skip_ :
SuffixArrayTrypticCompressed
skip_spectrum_ :
MzMLHandler< MapType >
,
MzXMLHandler< MapType >
,
MzDataHandler< MapType >
slope_ :
TransformationModelLinear
,
LinearRegression
slope_bound_ :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
slope_max_ :
TransformationModelBSpline
slope_min_ :
TransformationModelBSpline
sm_ :
XMLHandler
small_molecule_quantification_unit :
MzTabUnitIdMetaData
smallest_score_ :
PosteriorErrorProbabilityModel
smallmolecule_abundance_std_error_sub :
MzTabSmallMoleculeSectionRow
smallmolecule_abundance_stdev_sub :
MzTabSmallMoleculeSectionRow
smallmolecule_abundance_sub :
MzTabSmallMoleculeSectionRow
smiles :
MzTabSmallMoleculeSectionRow
smoothed_chroms_ :
MRMTransitionGroupPicker
smoothed_intensities_ :
MassTrace
sn_ :
SignalToNoiseOpenMS< PeakT >
sn_bin_count_ :
MRMTransitionGroupPicker
sn_win_len_ :
MRMTransitionGroupPicker
snap_factors_ :
SpectrumCanvas
snd_database_ :
SequestInfile
software :
MzTabUnitIdMetaData
software_ :
TargetedExperiment
,
DataProcessing
,
Instrument
,
MzMLHandler< MapType >
software_name_ :
SoftwareVisualizer
software_ref :
Prediction
,
RetentionTime
software_setting :
MzTabUnitIdMetaData
software_version_ :
SoftwareVisualizer
solver_ :
PrecursorIonSelection
,
PSProteinInference
,
OfflinePrecursorIonSelection
,
LPWrapper
,
PSLPFormulation
SOURCE_DIR :
FTPeakDetectController
source_feature_index_ :
AccurateMassSearchResult
source_file_ :
ChromatogramSettings
,
SpectrumSettings
source_files_ :
ExperimentalSettings
,
TargetedExperiment
,
MzMLHandler< MapType >
source_out_param_ :
TOPPASEdge
spacer_ :
Spectrum1DWidget
spacing_ :
LinearResampler
,
ContinuousWaveletTransform
,
GaussFilter
,
GaussFilterAlgorithm
spacing_for_spectra_resampling_ :
MRMFeatureFinderScoring
sparse_element_ :
SparseVector< Value >
spec :
PILISCrossValidation::Peptide
spec_ :
EdwardsLippertIterator
,
MzMLHandler< MapType >
,
MzDataHandler< MapType >
spec_1d_ :
IDEvaluationBase
spec_name :
LCMS
spec_ref_ :
MzTabSpectraRef
spec_write_counter_ :
MzXMLHandler< MapType >
species :
MzTabSmallMoleculeSectionRow
,
MzTabProteinSectionRow
,
MzTabSubIdMetaData
specificity_ :
EnzymaticDigestion
specificity_type_ :
Modification
spectra_ :
InspectInfile
,
MSExperiment< PeakT, ChromatogramPeakT >
spectra_aligner_ :
PILISModel
spectra_combo_box_ :
SpectraViewWidget
spectra_identification_view_widget_ :
TOPPViewBase
spectra_index_ :
CachedmzML
spectra_ref :
MzTabPeptideSectionRow
,
MzTabSmallMoleculeSectionRow
spectra_search_box_ :
SpectraViewWidget
spectra_treewidget_ :
SpectraViewWidget
spectra_view_widget_ :
TOPPViewBase
spectraview_behavior_ :
TOPPViewBase
spectrum :
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
,
PeakIndex
,
FeatureFinderAlgorithmPickedHelperStructs::Seed
spectrum_id :
TOPPViewBase
spectrum_ID :
SHFeature
spectrum_id :
LCMS
spectrum_identifications_ :
Identification
spectrum_widget_ :
SpectrumCanvas
spline_ :
TOFCalibration
,
SILACFiltering::SpectrumInterpolation
SQ :
MS2Info
ssize_ :
DataValue
stack_ :
Param::ParamIterator
stand_dev_residuals_ :
LinearRegression
stand_error_slope_ :
LinearRegression
standard_deviation_ :
LmaGaussModel
,
LmaGaussFitter1D
start_ :
PeptideEvidence
start_point_ :
Annotation1DDistanceItem
start_secs_ :
StopWatch
start_system_time_ :
StopWatch
start_usecs_ :
StopWatch
start_user_time_ :
StopWatch
startScan :
MS2ConsensusSpectrum
startTR :
MS2ConsensusSpectrum
state_ :
Sample
,
MzTabNullNaNAndInfAbleBase
states :
AnnotationStatistics
states_ :
HiddenMarkovModel
static_intensities :
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
statistics1_ :
BiGaussFitter1D
,
BiGaussModel
statistics2_ :
BiGaussFitter1D
,
BiGaussModel
statistics_ :
GaussModel
,
EmgModel
,
EGHModel
,
Fitter1D
,
LmaGaussModel
stats_ :
IsobaricQuantifier
,
PeptideAndProteinQuant
,
ItraqQuantifier
status_ :
TOPPASToolVertex
status_list_ :
MetaDataBrowser
stdev1_ :
Fitter1D
stdev2_ :
Fitter1D
stdev_ :
SignalToNoiseEstimatorMeanIterative< Container >
stickdata_ :
Spectrum3DOpenGLCanvas
stn_estimates_ :
SignalToNoiseEstimator< Container >
stop_after_feature_ :
MRMTransitionGroupPicker
stop_after_intensity_ratio_ :
MRMTransitionGroupPicker
stop_report_after_feature_ :
MRMFeatureFinderScoring
stop_watch_ :
ProgressLogger
store_ :
DataMatrix
storeAllLowProbabilityMS2Scans_ :
SuperHirnParameters
str_ :
OpenMSXMLFormatTarget
,
DataValue
str_list_ :
DataValue
strarray :
TransitionTSVReader
stream :
LogStreamBuf::StreamStruct
stream_ :
LogStreamNotifier
stream_at_end_ :
Bzip2Ifstream
,
GzipIfstream
stream_list_ :
LogStreamBuf
stream_type_map_ :
LogConfigHandler
strict_ :
MRMFeatureFinderScoring
string_data_arrays_ :
MSChromatogram< PeakT >
,
MSSpectrum< PeakT >
stringlist :
ParamXMLHandler
strip_namespaces_ :
CVMappingFile
struct_size_in_datapoints_ :
MorphologicalFilter
sub_id_data :
MzTabUnitIdMetaData
subordinate_feature_level_ :
FeatureXMLFile
subordinates_ :
Feature
subsamples_ :
Sample
subsections_ :
TOPPBase
,
DefaultParamHandler
subsections_TOPP_ :
TOPPBase
subspec_to_sequences_ :
CompNovoIdentificationBase
succ_states_ :
HMMState
sum_ :
BasicStatistics< RealT >
superimposer_ :
MapAlignmentAlgorithmPoseClustering
supported_schemes :
TOPPASResource
svm_feat_centers_ :
FeatureFindingMetabo
svm_feat_scales_ :
FeatureFindingMetabo
symbol_ :
Element
symbols_ :
ElementDB
symmetric_ :
LevMarqFitter1D
,
TransformationModelLinear
symmetry_ :
EmgModel
,
EmgFitter1D
synonym_trans_ :
HiddenMarkovModel
synonym_trans_names_ :
HiddenMarkovModel
synonyms :
ControlledVocabulary::CVTerm
synonyms_ :
ResidueModification
,
Residue
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5