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Normalizer Class Reference

Normalizer normalizes the peak intensities. More...

#include <OpenMS/FILTERING/TRANSFORMERS/Normalizer.h>

Inheritance diagram for Normalizer:
DefaultParamHandler

Public Member Functions

 Normalizer ()
 default constructor More...
 
virtual ~Normalizer ()
 desctructor More...
 
Normalizeroperator= (const Normalizer &source)
 assignment operator More...
 
 Normalizer (const Normalizer &source)
 copy constructror More...
 
template<typename SpectrumType >
void filterSpectrum (SpectrumType &spectrum)
 
void filterPeakSpectrum (PeakSpectrum &spectrum)
 
void filterPeakMap (PeakMap &exp)
 
- Public Member Functions inherited from DefaultParamHandler
 DefaultParamHandler (const String &name)
 Constructor with name that is displayed in error messages. More...
 
 DefaultParamHandler (const DefaultParamHandler &rhs)
 Copy constructor. More...
 
virtual ~DefaultParamHandler ()
 Destructor. More...
 
virtual DefaultParamHandleroperator= (const DefaultParamHandler &rhs)
 Assignment operator. More...
 
virtual bool operator== (const DefaultParamHandler &rhs) const
 Equality operator. More...
 
void setParameters (const Param &param)
 Sets the parameters. More...
 
const ParamgetParameters () const
 Non-mutable access to the parameters. More...
 
const ParamgetDefaults () const
 Non-mutable access to the default parameters. More...
 
const StringgetName () const
 Non-mutable access to the name. More...
 
void setName (const String &name)
 Mutable access to the name. More...
 
const std::vector< String > & getSubsections () const
 Non-mutable access to the registered subsections. More...
 

Private Attributes

String method_
 

Additional Inherited Members

- Protected Member Functions inherited from DefaultParamHandler
virtual void updateMembers_ ()
 This method is used to update extra member variables at the end of the setParameters() method. More...
 
void defaultsToParam_ ()
 Updates the parameters after the defaults have been set in the constructor. More...
 
- Protected Attributes inherited from DefaultParamHandler
Param param_
 Container for current parameters. More...
 
Param defaults_
 Container for default parameters. This member should be filled in the constructor of derived classes! More...
 
std::vector< Stringsubsections_
 Container for registered subsections. This member should be filled in the constructor of derived classes! More...
 
String error_name_
 Name that is displayed in error messages during the parameter checking. More...
 
bool check_defaults_
 If this member is set to false no checking if parameters in done;. More...
 
bool warn_empty_defaults_
 If this member is set to false no warning is emitted when defaults are empty;. More...
 

Detailed Description

Normalizer normalizes the peak intensities.

Parameters of this class are:

NameTypeDefaultRestrictionsDescription
method stringto_one to_one, to_TICNormalize by deviding though the TIC ('to_TIC') or normalize to max intensity of one ('to_one').

Note:

Constructor & Destructor Documentation

default constructor

virtual ~Normalizer ( )
virtual

desctructor

Normalizer ( const Normalizer source)

copy constructror

Member Function Documentation

void filterPeakMap ( PeakMap exp)
void filterPeakSpectrum ( PeakSpectrum spectrum)
void filterSpectrum ( SpectrumType &  spectrum)
inline
Normalizer& operator= ( const Normalizer source)

assignment operator

Member Data Documentation

String method_
private

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5