Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
MockObjects.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2013.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
33 // --------------------------------------------------------------------------
34 
35 #ifndef OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
36 #define OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
37 
38 #include <vector>
39 #include <map>
40 
41 #include <boost/shared_ptr.hpp>
42 
45 
46 namespace OpenSwath
47 {
48 
52  class OPENSWATHALGO_DLLAPI MockFeature :
53  public OpenSwath::IFeature
54  {
55 public:
56 
57  MockFeature();
58 
59  ~MockFeature();
60 
61  void getRT(std::vector<double>& rt);
62 
63  void getIntensity(std::vector<double>& intens);
64 
65  float getIntensity();
66 
67  double getRT();
68 
69  std::vector<double> m_rt_vec;
70  std::vector<double> m_intensity_vec;
71  float m_intensity;
72  double m_rt;
73  };
74 
78  class OPENSWATHALGO_DLLAPI MockMRMFeature :
80  {
81 public:
82 
84 
85  ~MockMRMFeature();
86 
87  boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID);
88 
89  float getIntensity();
90 
91  double getRT();
92 
93  std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
94  float m_intensity;
95  double m_rt;
96  };
97 
101  class OPENSWATHALGO_DLLAPI MockTransitionGroup :
103  {
104 public:
105 
107 
109 
110  std::size_t size();
111 
112  std::vector<std::string> getNativeIDs();
113 
114  void getLibraryIntensities(std::vector<double>& intensities);
115 
116  std::size_t m_size;
117  std::vector<std::string> m_native_ids;
118  std::vector<double> m_library_intensities;
119  };
120 
121 
125  class OPENSWATHALGO_DLLAPI MockSignalToNoise :
127  {
128 public:
130 
131  double getValueAtRT(double /* RT */);
132 
133  double m_sn_value;
134  };
135 
136 } //end namespace OpenMS
137 
138 #endif // OPENMS_ANALYSIS_OPENSWATH_OPENSWATHALGO_DATAACCESS_MOCKOBJECTS_H
std::vector< double > m_intensity_vec
Definition: MockObjects.h:70
std::vector< std::string > m_native_ids
Definition: MockObjects.h:117
Mock object implementing IMRMFeature.
Definition: MockObjects.h:78
Mock object implementing IFeature.
Definition: MockObjects.h:52
Definition: ITransition.h:65
float m_intensity
Definition: MockObjects.h:71
double m_sn_value
Definition: MockObjects.h:133
std::map< std::string, boost::shared_ptr< MockFeature > > m_features
Definition: MockObjects.h:93
Definition: ITransition.h:46
std::vector< double > m_library_intensities
Definition: MockObjects.h:118
std::size_t m_size
Definition: MockObjects.h:116
double m_rt
Definition: MockObjects.h:72
Mock object implementing ITransitionGroup.
Definition: MockObjects.h:101
float m_intensity
Definition: MockObjects.h:94
Definition: ITransition.h:56
std::vector< double > m_rt_vec
Definition: MockObjects.h:69
double m_rt
Definition: MockObjects.h:95
Mock object implementing ISignalToNoise.
Definition: MockObjects.h:125
Definition: ITransition.h:73

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:17 using doxygen 1.8.5