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IsotopeWaveletTransform< PeakType > Member List

This is the complete list of members for IsotopeWaveletTransform< PeakType >, including all inherited members.

av_MZ_spacing_IsotopeWaveletTransform< PeakType >protected
Box typedefIsotopeWaveletTransform< PeakType >
c_mzs_IsotopeWaveletTransform< PeakType >protected
c_sorted_candidate_IsotopeWaveletTransform< PeakType >protected
c_spacings_IsotopeWaveletTransform< PeakType >protected
checkPositionForPlausibility_(const TransSpectrum &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score)IsotopeWaveletTransform< PeakType >protectedvirtual
checkPositionForPlausibility_(const MSSpectrum< PeakType > &candidate, const MSSpectrum< PeakType > &ref, const DoubleReal seed_mz, const UInt c, const UInt scan_index, const bool check_PPMs, const DoubleReal transintens, const DoubleReal prev_score)IsotopeWaveletTransform< PeakType >protectedvirtual
checkPPMTheoModel_(const MSSpectrum< PeakType > &ref, const DoubleReal c_mz, const UInt c)IsotopeWaveletTransform< PeakType >protectedvirtual
closed_boxes_IsotopeWaveletTransform< PeakType >protected
clusterSeeds_(const TransSpectrum &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs)IsotopeWaveletTransform< PeakType >protected
clusterSeeds_(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const bool check_PPMs)IsotopeWaveletTransform< PeakType >protectedvirtual
computeMinSpacing(const MSSpectrum< PeakType > &c_ref)IsotopeWaveletTransform< PeakType >virtual
data_length_IsotopeWaveletTransform< PeakType >protected
end_boxes_IsotopeWaveletTransform< PeakType >protected
extendBox_(const MSExperiment< PeakType > &map, const Box box)IsotopeWaveletTransform< PeakType >protected
from_max_to_left_IsotopeWaveletTransform< PeakType >protected
from_max_to_right_IsotopeWaveletTransform< PeakType >protected
front_boxes_IsotopeWaveletTransform< PeakType >protected
getAvIntens_(const TransSpectrum &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getAvIntens_(const MSSpectrum< PeakType > &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getAvMZSpacing_(const MSSpectrum< PeakType > &scan)IsotopeWaveletTransform< PeakType >inlineprotected
getClosedBoxes()IsotopeWaveletTransform< PeakType >inlinevirtual
getLinearInterpolation(const typename MSSpectrum< PeakType >::const_iterator &left_iter, const DoubleReal mz_pos, const typename MSSpectrum< PeakType >::const_iterator &right_iter)IsotopeWaveletTransform< PeakType >inline
getLinearInterpolation(const DoubleReal mz_a, const DoubleReal intens_a, const DoubleReal mz_pos, const DoubleReal mz_b, const DoubleReal intens_b)IsotopeWaveletTransform< PeakType >inline
getMaxScanSize() const IsotopeWaveletTransform< PeakType >inline
getMinSpacing() const IsotopeWaveletTransform< PeakType >inline
getPPMs_(const DoubleReal mass_a, const DoubleReal mass_b) const IsotopeWaveletTransform< PeakType >inlineprotected
getSdIntens_(const TransSpectrum &scan, const DoubleReal mean)IsotopeWaveletTransform< PeakType >inlineprotected
getSdIntens_(const MSSpectrum< PeakType > &scan, const DoubleReal mean)IsotopeWaveletTransform< PeakType >inlineprotected
getSigma() const IsotopeWaveletTransform< PeakType >inline
getTransform(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c)IsotopeWaveletTransform< PeakType >virtual
getTransformHighRes(MSSpectrum< PeakType > &c_trans, const MSSpectrum< PeakType > &c_ref, const UInt c)IsotopeWaveletTransform< PeakType >virtual
hr_data_IsotopeWaveletTransform< PeakType >protected
identifyCharge(const MSSpectrum< PeakType > &candidates, const MSSpectrum< PeakType > &ref, const UInt scan_index, const UInt c, const DoubleReal ampl_cutoff, const bool check_PPMs)IsotopeWaveletTransform< PeakType >virtual
indices_IsotopeWaveletTransform< PeakType >protected
initializeScan(const MSSpectrum< PeakType > &c_ref, const UInt c=0)IsotopeWaveletTransform< PeakType >virtual
intenstype_IsotopeWaveletTransform< PeakType >protected
interpol_xs_IsotopeWaveletTransform< PeakType >protected
interpol_ys_IsotopeWaveletTransform< PeakType >protected
IsotopeWaveletTransform(const DoubleReal min_mz, const DoubleReal max_mz, const UInt max_charge, const Size max_scan_size=0, const bool use_cuda=false, const bool hr_data=false, const String intenstype="ref")IsotopeWaveletTransform< PeakType >
IsotopeWaveletTransform()IsotopeWaveletTransform< PeakType >protected
mapSeeds2Features(const MSExperiment< PeakType > &map, const UInt RT_votes_cutoff)IsotopeWaveletTransform< PeakType >
max_charge_IsotopeWaveletTransform< PeakType >protected
max_mz_cutoff_IsotopeWaveletTransform< PeakType >protected
max_num_peaks_per_pattern_IsotopeWaveletTransform< PeakType >protected
max_scan_size_IsotopeWaveletTransform< PeakType >protected
mergeFeatures(IsotopeWaveletTransform< PeakType > *later_iwt, const UInt RT_interleave, const UInt RT_votes_cutoff)IsotopeWaveletTransform< PeakType >
min_spacing_IsotopeWaveletTransform< PeakType >protected
open_boxes_IsotopeWaveletTransform< PeakType >protected
peptideMassRule_(const DoubleReal c_mass) const IsotopeWaveletTransform< PeakType >inlineprotected
prod_IsotopeWaveletTransform< PeakType >protected
psi_IsotopeWaveletTransform< PeakType >protected
push2Box_(const DoubleReal mz, const UInt scan, UInt c, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end, const DoubleReal ref_intens)IsotopeWaveletTransform< PeakType >protectedvirtual
push2TmpBox_(const DoubleReal mz, const UInt scan, UInt charge, const DoubleReal score, const DoubleReal intens, const DoubleReal rt, const UInt MZ_begin, const UInt MZ_end)IsotopeWaveletTransform< PeakType >protectedvirtual
sampleTheCMarrWavelet_(const MSSpectrum< PeakType > &scan, const Int wavelet_length, const Int mz_index, const UInt charge)IsotopeWaveletTransform< PeakType >inlineprotected
scores_IsotopeWaveletTransform< PeakType >protected
scoreThis_(const TransSpectrum &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff)IsotopeWaveletTransform< PeakType >protectedvirtual
scoreThis_(const MSSpectrum< PeakType > &candidate, const UInt peak_cutoff, const DoubleReal seed_mz, const UInt c, const DoubleReal ampl_cutoff)IsotopeWaveletTransform< PeakType >protectedvirtual
setSigma(const DoubleReal sigma)IsotopeWaveletTransform< PeakType >inline
sigma_IsotopeWaveletTransform< PeakType >protected
tmp_boxes_IsotopeWaveletTransform< PeakType >protected
updateBoxStates(const MSExperiment< PeakType > &map, const Size scan_index, const UInt RT_interleave, const UInt RT_votes_cutoff, const Int front_bound=-1, const Int end_bound=-1)IsotopeWaveletTransform< PeakType >
xs_IsotopeWaveletTransform< PeakType >protected
zeros_IsotopeWaveletTransform< PeakType >protected
~IsotopeWaveletTransform()IsotopeWaveletTransform< PeakType >virtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5