35 #ifndef OPENMS_SIMULATION_LABELING_SILACLABELER_H
36 #define OPENMS_SIMULATION_LABELING_SILACLABELER_H
75 void preCheck(
Param& )
const;
92 void addModificationToPeptideHit_(
Feature& feature,
const String& modification)
const;
104 bool canModificationBeApplied_(
const String& modification_id,
const String& aa)
const;
106 void applyLabelToProteinHit_(
FeatureMapSim& protein_hit,
const String& arginine_label,
const String& lysine_label)
const;
108 void updateMembers_();
123 #endif //#ifndef OPENMS_SIMULATION_LABELING_SILACLABELER_H
String medium_channel_arginine_label_
Definition: SILACLabeler.h:99
A more convenient string class.
Definition: String.h:56
static const int LIGHT_FEATURE_MAPID_
Map ID for the light/unlabeled channel.
Definition: SILACLabeler.h:114
A container for features.
Definition: FeatureMap.h:111
static const String getProductName()
name of the model (needed by Factory)
Definition: SILACLabeler.h:69
String medium_channel_lysine_label_
Definition: SILACLabeler.h:98
static const int HEAVY_FEATURE_MAPID_
Map ID for the heavy labeled channel.
Definition: SILACLabeler.h:118
String heavy_channel_arginine_label_
Definition: SILACLabeler.h:102
static const int MEDIUM_FEATURE_MAPID_
Map ID for the medium labeled channel.
Definition: SILACLabeler.h:116
An LC-MS feature.
Definition: Feature.h:66
Management and storage of parameters / INI files.
Definition: Param.h:69
String heavy_channel_lysine_label_
Definition: SILACLabeler.h:101
std::vector< FeatureMapSim > FeatureMapSimVector
Sim FeatureMap Vector.
Definition: SimTypes.h:80
Simulate SILAC experiments.
Definition: SILACLabeler.h:51
int Int
Signed integer type.
Definition: Types.h:100
Map class based on the STL map (containing serveral convenience functions)
Definition: Map.h:50
Abstract base class for all kinds of labeling techniques.
Definition: BaseLabeler.h:54
static BaseLabeler * create()
create new object (needed by Factory)
Definition: SILACLabeler.h:63