35 #ifndef OPENMS_FILTERING_DATAREDUCTION_DATAFILTERS_H
36 #define OPENMS_FILTERING_DATAREDUCTION_DATAFILTERS_H
46 class ConsensusFeature;
91 value_is_numerical(false)
118 void fromString(
const String & filter);
123 return field == rhs.
field
125 && value == rhs.
value
134 return !operator==(rhs);
147 const DataFilter & operator[](
Size index)
const;
150 void add(
const DataFilter & filter);
157 void remove(
Size index);
164 void replace(
Size index,
const DataFilter & filter);
170 void setActive(
bool is_active);
184 bool passes(
const Feature & feature)
const;
190 template <
class PeakType>
193 if (!is_active_)
return true;
195 for (
Size i = 0; i < filters_.size(); i++)
198 if (filter.
field == INTENSITY)
203 if (spectrum[peak_index].getIntensity() < filter.
value)
return false;
208 if (spectrum[peak_index].getIntensity() != filter.
value)
return false;
213 if (spectrum[peak_index].getIntensity() > filter.
value)
return false;
221 else if (filter.
field == META_DATA)
226 for (
Size j = 0; j < f_arrays.size(); ++j)
228 if (f_arrays[j].getName() == filter.
meta_name)
237 if (filter.
op == EQUAL && f_arrays[f_index][peak_index] != filter.
value)
return false;
238 else if (filter.
op == LESS_EQUAL && f_arrays[f_index][peak_index] > filter.
value)
return false;
239 else if (filter.
op == GREATER_EQUAL && f_arrays[f_index][peak_index] < filter.
value)
return false;
246 for (
Size j = 0; j < i_arrays.size(); ++j)
248 if (i_arrays[j].getName() == filter.
meta_name)
257 if (filter.
op == EQUAL && i_arrays[i_index][peak_index] != filter.
value)
return false;
258 else if (filter.
op == LESS_EQUAL && i_arrays[i_index][peak_index] > filter.
value)
return false;
259 else if (filter.
op == GREATER_EQUAL && i_arrays[i_index][peak_index] < filter.
value)
return false;
263 if (f_index == -1 && i_index == -1)
return false;
282 else if (filter.
op != EXISTS)
291 if (filter.
op != EQUAL)
return false;
300 if (filter.
op == EQUAL && (
double)data_value != filter.
value)
return false;
301 else if (filter.
op == LESS_EQUAL && (
double)data_value > filter.
value)
return false;
302 else if (filter.
op == GREATER_EQUAL && (
double)data_value < filter.
value)
return false;
bool passes(const MSSpectrum< PeakType > &spectrum, Size peak_index) const
Returns if the peak fulfills the current filter criteria.
Definition: DataFilters.h:191
bool operator!=(const DataFilter &rhs) const
Inequality operator.
Definition: DataFilters.h:132
Filter the intensity value.
Definition: DataFilters.h:66
A more convenient string class.
Definition: String.h:56
DataFilters()
Definition: DataFilters.h:56
FilterOperation
Filter operation.
Definition: DataFilters.h:73
bool operator==(const DataFilter &rhs) const
Equality operator.
Definition: DataFilters.h:121
String toString() const
Conversion to String.
DataFilter()
Default constructor.
Definition: DataFilters.h:85
ptrdiff_t SignedSize
Signed Size type e.g. used as pointer difference.
Definition: Types.h:151
std::vector< Size > meta_indices_
Vector of meta indices acting as index cache.
Definition: DataFilters.h:273
const IntegerDataArrays & getIntegerDataArrays() const
Returns a const reference to the integer meta data arrays.
Definition: MSSpectrum.h:294
DoubleReal value
Value for comparison.
Definition: DataFilters.h:100
Class to hold strings, numeric values, lists of strings and lists of numeric values.
Definition: DataValue.h:57
FilterType
Information to filter.
Definition: DataFilters.h:64
Representation of a peak/feature filter combining FilterType, FilterOperation and a value...
Definition: DataFilters.h:82
Equal to the value.
Definition: DataFilters.h:76
DataType valueType() const
returns the type of value stored
Definition: DataValue.h:330
bool metaPasses_(const MetaInfoInterface &meta_interface, const DataFilters::DataFilter &filter, Size index) const
Returns if the meta value at index of meta_interface (a peak or feature) passes the filter...
Definition: DataFilters.h:279
FilterType field
Field to filter.
Definition: DataFilters.h:96
std::vector< DataFilter > filters_
Array of DataFilters.
Definition: DataFilters.h:271
string value
Definition: DataValue.h:68
An LC-MS feature.
Definition: Feature.h:66
Filter the charge value.
Definition: DataFilters.h:68
bool isActive() const
Returns if the filters are enabled.
Definition: DataFilters.h:178
String value_string
String value for comparison (for meta data)
Definition: DataFilters.h:102
FilterOperation op
Filter operation.
Definition: DataFilters.h:98
String meta_name
Name of the considered meta information.
Definition: DataFilters.h:104
Filter the overall quality value.
Definition: DataFilters.h:67
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:144
DataFilter array providing some convenience functions.
Definition: DataFilters.h:53
const FloatDataArrays & getFloatDataArrays() const
Returns a const reference to the float meta data arrays.
Definition: MSSpectrum.h:270
Greater than the value or equal to the value.
Definition: DataFilters.h:75
bool value_is_numerical
Bool value that indicates if the specified value is numerical.
Definition: DataFilters.h:106
bool is_active_
Determines if the filters are activated.
Definition: DataFilters.h:276
Less than the value or equal to the value.
Definition: DataFilters.h:77
A 2-dimensional consensus feature.
Definition: ConsensusFeature.h:59
empty value
Definition: DataValue.h:74
Filter the number of subordinates/elements.
Definition: DataFilters.h:69