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BackgroundIntensityBin.h
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5 // ETH Zurich, and Freie Universitaet Berlin 2002-2013.
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31 // $Maintainer: Florian Zeller $
32 // $Authors: Lukas Mueller, Markus Mueller $
33 // --------------------------------------------------------------------------
34 //
36 //
37 // PEAK DETECTION OF FOURIER TRANSFORME MS INSTRUMENT DATA
38 //
39 // written by Markus Mueller, markus.mueller@imsb.biol.ethz.ch
40 // ( and Lukas Mueller, Lukas.Mueller@imsb.biol.ethz.ch)
41 // October 2005
42 //
43 // Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
44 // December 2010
45 //
46 // Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich
47 //
48 //
49 
50 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
51 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
52 
53 namespace OpenMS
54 {
55 
56  class OPENMS_DLLAPI BackgroundIntensityBin
57  {
58 
59 private:
60 
61  // do not allow default constructor
63  {
64  }
65 
66  // mz and tr coordinates of the bin:
67  double mzCoord_;
68  double trCoord_;
69  double zCoord_;
70 
71  std::vector<double> intensityMap_;
72  std::map<double, double> intensityHist_;
73 
74  double mean_;
75  void computeIntensityHist();
76 
77 public:
78 
79  virtual ~BackgroundIntensityBin();
80 
81  // copy constructor
83 
84  // assignment operator
86 
87  BackgroundIntensityBin(double, double);
88 
89  /*
90  * @brief Check if a peak belongs to this intenisty bin
91  */
92  bool checkBelonging(MSPeak *);
93 
94  /*
95  * @brief Add intensity to BackgroundIntensityBin
96  */
97  void addIntensity(double);
98 
99  /*
100  * @brief add peak to BackgroundIntensityBin
101  */
102  void addMSPeak(MSPeak *);
103  /*
104  * @brief Process collected intensities in the map
105  */
106  void processIntensities();
107 
108  std::vector<double> * getIntensityMap()
109  { return &intensityMap_; }
110  std::map<double, double> * getIntensityHist()
111  { return &intensityHist_; }
112  double getMean()
113  { return mean_; }
114  };
115 
116 } // ns
117 
118 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
double trCoord_
Definition: BackgroundIntensityBin.h:68
double mzCoord_
Definition: BackgroundIntensityBin.h:67
std::map< double, double > intensityHist_
Definition: BackgroundIntensityBin.h:72
BackgroundIntensityBin()
Definition: BackgroundIntensityBin.h:62
Definition: BackgroundIntensityBin.h:56
std::map< double, double > * getIntensityHist()
Definition: BackgroundIntensityBin.h:110
double mean_
Definition: BackgroundIntensityBin.h:74
Definition: MSPeak.h:64
double zCoord_
Definition: BackgroundIntensityBin.h:69
std::vector< double > * getIntensityMap()
Definition: BackgroundIntensityBin.h:108
double getMean()
Definition: BackgroundIntensityBin.h:112
std::vector< double > intensityMap_
Definition: BackgroundIntensityBin.h:71

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:11 using doxygen 1.8.5