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TwoDOptimization Member List

This is the complete list of members for TwoDOptimization, including all inherited members.

check_defaults_DefaultParamHandlerprotected
curr_region_TwoDOptimizationprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
eps_abs_TwoDOptimizationprotected
eps_rel_TwoDOptimizationprotected
error_name_DefaultParamHandlerprotected
evaluate2D_(const gsl_vector *x, void *params, gsl_vector *f, gsl_matrix *J)TwoDOptimizationprotectedstatic
findMatchingPeaks_(std::multimap< DoubleReal, IsotopeCluster >::iterator &it, MSExperiment<> &ms_exp)TwoDOptimizationprotected
getDefaults() const DefaultParamHandler
getMaxAbsError() const TwoDOptimizationinline
getMaxIterations() const TwoDOptimizationinline
getMaxPeakDistance() const TwoDOptimizationinline
getMaxRelError() const TwoDOptimizationinline
getMZTolerance() const TwoDOptimizationinline
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getPenalties() const TwoDOptimizationinline
getRegionEndpoints_(MSExperiment< OutputPeakType > &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, DoubleReal noise_level, TwoDOptimization::Data &d)TwoDOptimizationprotected
getSubsections() const DefaultParamHandler
iso_map_TwoDOptimizationprotected
jacobian2D_(const gsl_vector *x, void *params, gsl_matrix *J)TwoDOptimizationprotectedstatic
matching_peaks_TwoDOptimizationprotected
max_iteration_TwoDOptimizationprotected
max_peak_distance_TwoDOptimizationprotected
operator=(const TwoDOptimization &opt)TwoDOptimization
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
optimize(InputSpectrumIterator first, InputSpectrumIterator last, MSExperiment< OutputPeakType > &ms_exp, bool real2D=true)TwoDOptimization
optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp)TwoDOptimizationprotected
optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, MSExperiment< OutputPeakType > &ms_exp)TwoDOptimizationprotected
param_DefaultParamHandlerprotected
penalties_TwoDOptimizationprotected
real_2D_TwoDOptimizationprotected
residual2D_(const gsl_vector *x, void *params, gsl_vector *f)TwoDOptimizationprotectedstatic
searchInScan_(std::vector< DoubleReal >::iterator scan_begin, std::vector< DoubleReal >::iterator scan_end, DoubleReal current_mz)TwoDOptimizationprotected
setMaxAbsError(DoubleReal eps_abs)TwoDOptimizationinline
setMaxIterations(UInt max_iteration)TwoDOptimizationinline
setMaxPeakDistance(DoubleReal max_peak_distance)TwoDOptimizationinline
setMaxRelError(DoubleReal eps_rel)TwoDOptimizationinline
setMZTolerance(DoubleReal tolerance_mz)TwoDOptimizationinline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties)TwoDOptimizationinline
subsections_DefaultParamHandlerprotected
tolerance_mz_TwoDOptimizationprotected
TwoDOptimization()TwoDOptimization
TwoDOptimization(const TwoDOptimization &opt)TwoDOptimization
updateMembers_()TwoDOptimizationprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~TwoDOptimization()TwoDOptimizationinlinevirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:35 using doxygen 1.8.5