This is the complete list of members for ModificationsDB, including all inherited members.
findModificationIndex(const String &mod_name) const | ModificationsDB | |
getAllSearchModifications(std::vector< String > &modifications) | ModificationsDB | |
getInstance() | ModificationsDB | inlinestatic |
getModification(Size index) const | ModificationsDB | |
getModification(const String &residue_name, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
getModification(const String &modification) const | ModificationsDB | |
getModificationsByDiffMonoMass(std::vector< String > &mods, DoubleReal mass, DoubleReal error=0.0) | ModificationsDB | |
getModificationsByDiffMonoMass(std::vector< String > &mods, const String &residue, DoubleReal mass, DoubleReal error=0.0) | ModificationsDB | |
getNumberOfModifications() const | ModificationsDB | |
getTerminalModification(const String &name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
getTerminalModificationsByDiffMonoMass(std::vector< String > &mods, DoubleReal mass, DoubleReal error, ResidueModification::Term_Specificity term_spec) | ModificationsDB | |
modification_names_ | ModificationsDB | protected |
ModificationsDB() | ModificationsDB | private |
ModificationsDB(const ModificationsDB &residue_db) | ModificationsDB | private |
mods_ | ModificationsDB | protected |
operator=(const ModificationsDB &aa) | ModificationsDB | private |
readFromOBOFile(const String &filename) | ModificationsDB | |
readFromUnimodXMLFile(const String &filename) | ModificationsDB | |
searchModifications(std::set< const ResidueModification * > &mods, const String &orgin, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
searchModifications(std::set< const ResidueModification * > &mods, const String &mod_name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
searchTerminalModifications(std::set< const ResidueModification * > &mods, const String &name, ResidueModification::Term_Specificity term_spec) const | ModificationsDB | |
~ModificationsDB() | ModificationsDB | privatevirtual |