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MS2File Class Reference

MS2 input file adapter. More...

#include <OpenMS/FORMAT/MS2File.h>

Inheritance diagram for MS2File:
ProgressLogger

Public Member Functions

 MS2File ()
 constructor More...
 
virtual ~MS2File ()
 constructor More...
 
template<typename MapType >
void load (const String &filename, MapType &exp)
 
- Public Member Functions inherited from ProgressLogger
 ProgressLogger ()
 Constructor. More...
 
 ~ProgressLogger ()
 Destructor. More...
 
void setLogType (LogType type) const
 Sets the progress log that should be used. The default type is NONE! More...
 
LogType getLogType () const
 Returns the type of progress log being used. More...
 
void startProgress (SignedSize begin, SignedSize end, const String &label) const
 Initializes the progress display. More...
 
void setProgress (SignedSize value) const
 Sets the current progress. More...
 
void endProgress () const
 Ends the progress display. More...
 

Additional Inherited Members

- Public Types inherited from ProgressLogger
enum  LogType { CMD, GUI, NONE }
 Possible log types. More...
 
- Protected Attributes inherited from ProgressLogger
LogType type_
 
SignedSize begin_
 
SignedSize end_
 
SignedSize value_
 
QProgressDialog * dlg_
 
StopWatch stop_watch_
 
time_t last_invoke_
 
- Static Protected Attributes inherited from ProgressLogger
static int recursion_depth_
 

Detailed Description

MS2 input file adapter.

For the format description take a look at: Rapid Commun Mass Spectrom. 2004;18(18):2162-8.

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, Graumann J, Johnson JR, Cociorva D, Yates JR 3rd.

PMID: 15317041

Constructor & Destructor Documentation

MS2File ( )

constructor

virtual ~MS2File ( )
virtual

constructor

Member Function Documentation

void load ( const String filename,
MapType &  exp 
)
inline

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:31 using doxygen 1.8.5