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File List
Here is a list of all files with brief descriptions:
o*AAIndex.h
o*AASequence.h
o*AccurateMassSearch.C
o*AccurateMassSearchEngine.h
o*Acquisition.h
o*AcquisitionInfo.h
o*AcquisitionInfoVisualizer.h
o*AcquisitionVisualizer.h
o*AcqusHandler.h
o*AdditiveSeries.C
o*Adduct.h
o*Annotation1DDistanceItem.h
o*Annotation1DItem.h
o*Annotation1DPeakItem.h
o*Annotation1DTextItem.h
o*Annotations1DContainer.h
o*AreaIterator.h
o*AScore.h
o*AsymmetricStatistics.h
o*AverageLinkage.h
o*AveragePosition.h
o*AxisPainter.h
o*AxisTickCalculator.h
o*AxisWidget.h
o*BackgroundControl.h
o*BackgroundIntensityBin.h
o*Base64.h
o*BaseFeature.h
o*BaseGroupFinder.h
o*BaseLabeler.h
o*BaseLabeler_impl.h
o*BaselineFilter.C
o*BaseModel.h
o*BaseModel_impl.h
o*BaseSuperimposer.h
o*BaseVisualizer.h
o*BaseVisualizerGUI.h
o*BasicStatistics.h
o*BernNorm.h
o*BiGaussFitter1D.h
o*BiGaussModel.h
o*BigString.h
o*BilinearInterpolation.h
o*BinaryComposeFunctionAdapter.h
o*BinaryTreeNode.h
o*BinnedSharedPeakCount.h
o*BinnedSpectralContrastAngle.h
o*BinnedSpectrum.h
o*BinnedSpectrumCompareFunctor.h
o*BinnedSumAgreeingIntensities.h
o*Bzip2Ifstream.h
o*Bzip2InputStream.h
o*CachedmzML.h
o*CentroidData.h
o*CentroidPeak.h
o*Changelog.doxygen
o*ChargePair.h
o*ChromatogramExtractor.h
o*ChromatogramPeak.h
o*ChromatogramSettings.h
o*ChromatogramTools.h
o*ClassTest.h
o*ClusterAnalyzer.h
o*ClusteredMS2ConsensusSpectrum.h
o*ClusterFunctor.h
o*ClusterHierarchical.h
o*CodingConvention.doxygen
o*ColorSelector.h
o*ComparatorUtils.h
o*CompareFouriertransform.h
o*ComplementFilter.h
o*ComplementMarker.h
o*CompleteLinkage.h
o*CompNovo.C
o*CompNovoCID.C
o*CompNovoIdentification.h
o*CompNovoIdentificationBase.h
o*CompNovoIdentificationCID.h
o*CompNovoIonScoring.h
o*CompNovoIonScoringBase.h
o*CompNovoIonScoringCID.h
o*Compomer.h
o*CompressedInputSource.h
o*ConfidenceScoring.h
o*ConsensusFeature.h
o*ConsensusID.C
o*ConsensusID.h
o*ConsensusIsotopePattern.h
o*ConsensusMap.h
o*ConsensusMapNormalizer.C
o*ConsensusMapNormalizerAlgorithmMedian.h
o*ConsensusMapNormalizerAlgorithmQuantile.h
o*ConsensusMapNormalizerAlgorithmThreshold.h
o*ConsensusXMLFile.h
o*ConsoleUtils.h
o*Constants.h
o*ConstRefVector.h
o*ContactPerson.h
o*ContactPersonVisualizer.h
o*ContinuousWaveletTransform.h
o*ContinuousWaveletTransformNumIntegration.h
o*Contributing.doxygen
o*ControlledVocabulary.h
o*ConvertTraMLToTSV.C
o*ConvertTSVToTraML.C
o*ConvexHull2D.h
o*CPPGuide.doxygen
o*CsvFile.h
o*CVInspector.C
o*CVMappingFile.h
o*CVMappingRule.h
o*CVMappings.h
o*CVMappingTerm.h
o*CVReference.h
o*CVTerm.h
o*CVTermList.h
o*DataAccessHelper.h
o*DataFilterDialog.h
o*DataFilters.h
o*DataFrameWriter.h
o*DataProcessing.h
o*DataProcessingVisualizer.h
o*ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/DataStructures.h
o*INTERFACES/DataStructures.h
o*DataValue.h
o*Date.h
o*DateTime.h
o*DBAdapter.h
o*DBConnection.h
o*DBExporter.C
o*DBImporter.C
o*DBOpenDialog.h
o*DBoundingBox.h
o*Decharger.C
o*DecoyDatabase.C
o*DefaultParamHandler.h
o*Deisotoper.h
o*DeMeanderize.C
o*DeNovoAlgorithm.h
o*DeNovoIdentification.h
o*DeNovoIonScoring.h
o*DeNovoPostScoring.h
o*DetectabilitySimulation.h
o*DIAHelper.h
o*DIAPrescoring.h
o*DIAScoring.h
o*Digestion.h
o*DigestionVisualizer.h
o*Digestor.C
o*DigestorMotif.C
o*DigestSimulation.h
o*DIntervalBase.h
o*DistanceMatrix.h
o*DocumentIdentifier.h
o*DocumentIdentifierVisualizer.h
o*DocumentIDTagger.h
o*DoubleList.h
o*DPeak.h
o*DPosition.h
o*DRange.h
o*DRichPeak.h
o*DTA2DFile.h
o*DTAExtractor.C
o*DTAFile.h
o*EDTAFile.h
o*EdwardsLippertIterator.h
o*EdwardsLippertIteratorTryptic.h
o*EGHFitter1D.h
o*EGHModel.h
o*EGHTraceFitter.h
o*EICExtractor.C
o*Element.h
o*ElementDB.h
o*ElutionPeakDetection.h
o*EmgFitter1D.h
o*EmgModel.h
o*EmgScoring.h
o*EmpiricalFormula.h
o*EnhancedTabBar.h
o*EnhancedTabBarWidgetInterface.h
o*EnhancedWorkspace.h
o*EnzymaticDigestion.h
o*ERPairFinder.C
o*EuclideanSimilarity.h
o*Exception.h
o*ExecutePipeline.C
o*ExperimentalSettings.h
o*ExperimentalSettingsVisualizer.h
o*ExtendedIsotopeFitter1D.h
o*ExtendedIsotopeModel.h
o*ExternalCode.doxygen
o*Factory.h
o*FactoryBase.h
o*FalseDiscoveryRate.C
o*FalseDiscoveryRate.h
o*public/FAQ.doxygen
o*internal/FAQ.doxygen
o*FASTAFile.h
o*FastaIterator.h
o*FastaIteratorIntern.h
o*FeaFiModule.h
o*Feature.h
o*FeatureDeconvolution.h
o*FeatureDistance.h
o*FeatureEditDialog.h
o*FeatureFileOptions.h
o*FeatureFinder.h
o*FeatureFinder_impl.h
o*FeatureFinderAlgorithm.h
o*FeatureFinderAlgorithm_impl.h
o*FeatureFinderAlgorithmIsotopeWavelet.h
o*FeatureFinderAlgorithmMRM.h
o*FeatureFinderAlgorithmPicked.h
o*FeatureFinderAlgorithmPickedHelperStructs.h
o*FeatureFinderAlgorithmSH.h
o*FeatureFinderAlgorithmSHCtrl.h
o*FeatureFinderAlgorithmSimple.h
o*FeatureFinderAlgorithmSimplest.h
o*FeatureFinderCentroided.C
o*FeatureFinderDefs.h
o*FeatureFinderIsotopeWavelet.C
o*FeatureFinderMetabo.C
o*FeatureFinderMRM.C
o*FeatureFinderRaw.C
o*FeatureFinderSuperHirn.C
o*FeatureFindingMetabo.h
o*FeatureGroupingAlgorithm.h
o*FeatureGroupingAlgorithmIdentification.h
o*FeatureGroupingAlgorithmLabeled.h
o*FeatureGroupingAlgorithmQT.h
o*FeatureGroupingAlgorithmUnlabeled.h
o*FeatureHandle.h
o*FeatureLCProfile.h
o*FeatureLinkerBase.C
o*FeatureLinkerLabeled.C
o*FeatureLinkerUnlabeled.C
o*FeatureLinkerUnlabeledQT.C
o*FeatureMap.h
o*FeatureXMLFile.h
o*FFEval.C
o*FidHandler.h
o*File.h
o*FileConverter.C
o*FileFilter.C
o*FileHandler.h
o*FileInfo.C
o*FileMerger.C
o*FileTypes.h
o*FileWatcher.h
o*FilterFunctor.h
o*Fitter1D.h
o*FTPeakDetectController.h
o*FuzzyDiff.C
o*FuzzyStringComparator.h
o*GammaDistributionFitter.h
o*GaussFilter.h
o*GaussFilterAlgorithm.h
o*GaussFitter.h
o*GaussFitter1D.h
o*GaussModel.h
o*GaussTraceFitter.h
o*GenericWrapper.C
o*GlobalExceptionHandler.h
o*GoodDiffFilter.h
o*Gradient.h
o*GradientVisualizer.h
o*GridFeature.h
o*GumbelDistributionFitter.h
o*GzipIfstream.h
o*GzipInputStream.h
o*HashGrid.h
o*HiddenMarkovModel.h
o*HierarchicalClustering.h
o*HighResPrecursorMassCorrector.C
o*Histogram.h
o*HistogramDialog.h
o*HistogramWidget.h
o*HPLC.h
o*HPLCVisualizer.h
o*ICPLLabeler.h
o*IDConflictResolver.C
o*IDDecoyProbability.C
o*IDDecoyProbability.h
o*Identification.h
o*IdentificationHit.h
o*IDEvaluationBase.C
o*IDEvaluationBase.h
o*IDEvaluator.C
o*IDEvaluatorGUI.C
o*IDExtractor.C
o*IDFileConverter.C
o*IDFilter.C
o*IDFilter.h
o*IDMapper.C
o*IDMapper.h
o*IDMassAccuracy.C
o*IDMerger.C
o*IDPosteriorErrorProbability.C
o*IDRipper.C
o*IDRipper.h
o*IDRTCalibration.C
o*IDSplitter.C
o*IdXMLFile.h
o*ILPDCWrapper.h
o*ImageCreator.C
o*IMSAlphabet.h
o*IMSAlphabetParser.h
o*IMSAlphabetTextParser.h
o*IMSElement.h
o*IMSIsotopeDistribution.h
o*IncludeExcludeTarget.h
o*InclusionExclusionList.h
o*InclusionExclusionListCreator.C
o*INIFileEditor.C
o*INIFileEditorWindow.C
o*INIFileEditorWindow.h
o*INIUpdater.C
o*INIUpdater.h
o*InspectAdapter.C
o*InspectInfile.h
o*InspectOutfile.h
o*install-linux-bin.doxygen
o*install-linux.doxygen
o*install-macs-bin.doxygen
o*install-macs.doxygen
o*install-win-bin.doxygen
o*install-win.doxygen
o*Instrument.h
o*InstrumentSettings.h
o*InstrumentSettingsVisualizer.h
o*InstrumentVisualizer.h
o*IntegerMassDecomposer.h
o*IntensityBalanceFilter.h
o*InternalCalibration.C
o*InternalCalibration.h
o*InterpolationModel.h
o*IntList.h
o*IonDetector.h
o*IonDetectorVisualizer.h
o*IonizationSimulation.h
o*IonSource.h
o*IonSourceVisualizer.h
o*IsobaricAnalyzer.C
o*IsobaricChannelExtractor.h
o*IsobaricIsotopeCorrector.h
o*IsobaricNormalizer.h
o*IsobaricQuantifier.h
o*IsobaricQuantifierStatistics.h
o*IsobaricQuantitationMethod.h
o*IsotopeCluster.h
o*IsotopeDiffFilter.h
o*IsotopeDistribution.h
o*IsotopeDistributionCache.h
o*IsotopeFitter1D.h
o*IsotopeMarker.h
o*IsotopeModel.h
o*IsotopeWavelet.h
o*IsotopeWaveletConstants.h
o*IsotopeWaveletCudaKernel.h
o*IsotopeWaveletParallelFor.h
o*IsotopeWaveletTransform.h
o*IsotopicDist.h
o*ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h
o*INTERFACES/ISpectrumAccess.h
o*ITransition.h
o*ITRAQAnalyzer.C
o*ItraqChannelExtractor.h
o*ItraqConstants.h
o*ItraqEightPlexQuantitationMethod.h
o*ItraqFourPlexQuantitationMethod.h
o*ITRAQLabeler.h
o*ItraqQuantifier.h
o*KnownDevBugs.doxygen
o*KroenikFile.h
o*LabeledEval.C
o*LabeledPairFinder.h
o*LabelFreeLabeler.h
o*LayerData.h
o*LayerStatisticsDialog.h
o*LCElutionPeak.h
o*LCMS.h
o*LCMSCData.h
o*LevMarqFitter1D.h
o*LibSVMEncoder.h
o*LinearInterpolation.h
o*LinearRegression.h
o*LinearResampler.h
o*LinearResamplerAlign.h
o*ListEditor.h
o*LmaGaussFitter1D.h
o*LmaGaussModel.h
o*LmaIsotopeFitter1D.h
o*LmaIsotopeModel.h
o*LocalLinearMap.h
o*LogConfigHandler.h
o*LogStream.h
o*LowessSmoothing.h
o*LPWrapper.h
o*Macros.h
o*Main.doxygen
o*Map.h
o*MapAlignerBase.h
o*MapAlignerIdentification.C
o*MapAlignerPoseClustering.C
o*MapAlignerSpectrum.C
o*MapAlignmentAlgorithm.h
o*MapAlignmentAlgorithmIdentification.h
o*MapAlignmentAlgorithmPoseClustering.h
o*MapAlignmentAlgorithmSpectrumAlignment.h
o*MapAlignmentEvaluation.C
o*MapAlignmentEvaluationAlgorithm.h
o*MapAlignmentEvaluationAlgorithmPrecision.h
o*MapAlignmentEvaluationAlgorithmRecall.h
o*MapAlignmentTransformer.h
o*MapNormalizer.C
o*MapRTTransformer.C
o*MapStatistics.C
o*MarkerMower.h
o*MascotAdapter.C
o*MascotAdapterOnline.C
o*MascotGenericFile.h
o*MascotInfile.h
o*MascotRemoteQuery.h
o*MascotXMLFile.h
o*MascotXMLHandler.h
o*MassAnalyzer.h
o*MassAnalyzerVisualizer.h
o*MassCalculator.C
o*MassDecomposer.h
o*MassDecomposition.h
o*MassDecompositionAlgorithm.h
o*MassExplainer.h
o*MassTrace.h
o*MassTraceDetection.h
o*MassTraceExtractor.C
o*MathFunctions.h
o*Matrix.h
o*MaxLikeliFitter1D.h
o*MetaDataBrowser.h
o*MetaInfo.h
o*MetaInfoDescription.h
o*MetaInfoDescriptionVisualizer.h
o*MetaInfoInterface.h
o*MetaInfoRegistry.h
o*MetaInfoVisualizer.h
o*MockObjects.h
o*ModelDescription.h
o*ModelFitter.h
o*Modification.h
o*ModificationDefinition.h
o*ModificationDefinitionsSet.h
o*ModificationsDB.h
o*ModificationVisualizer.h
o*ModifierRep.h
o*Modules.doxygen
o*MorphologicalFilter.h
o*MRMDecoy.h
o*MRMFeature.h
o*MRMFeatureAccessOpenMS.h
o*MRMFeatureFinderScoring.h
o*MRMFragmentSelection.h
o*MRMMapper.C
o*MRMPairFinder.C
o*MRMRTNormalizer.h
o*MRMScoring.h
o*MRMTransitionGroup.h
o*MRMTransitionGroupPicker.h
o*MS1FeatureMerger.h
o*MS2ConsensusSpectrum.h
o*MS2Feature.h
o*MS2File.h
o*MS2Fragment.h
o*MS2Info.h
o*MSChromatogram.h
o*MSExperiment.h
o*MsInspectFile.h
o*MSPeak.h
o*MSPFile.h
o*MSQuantifications.h
o*MSSim.h
o*MSSimulator.C
o*MSSpectrum.h
o*MultiGradient.h
o*MultiGradientSelector.h
o*MyriMatchAdapter.C
o*MzDataFile.h
o*MzDataHandler.h
o*MzDataValidator.h
o*MzIdentMLFile.h
o*MzIdentMLHandler.h
o*MzIdentMLValidator.h
o*MzMLFile.h
o*MzMLHandler.h
o*MzMLValidator.h
o*MzQuantMLFile.h
o*MzQuantMLHandler.h
o*MzQuantMLValidator.h
o*MzTab.h
o*MzTabExporter.C
o*MzTabFile.h
o*MzXMLFile.h
o*MzXMLHandler.h
o*NeutralLossDiffFilter.h
o*NeutralLossMarker.h
o*NLargest.h
o*NNLS.h
o*NoiseFilterGaussian.C
o*NoiseFilterSGolay.C
o*NonNegativeLeastSquaresSolver.h
o*Normalizer.h
o*O18Labeler.h
o*OfflinePrecursorIonSelection.h
o*OMSSAAdapter.C
o*OMSSACSVFile.h
o*OMSSAXMLFile.h
o*OpenMS_Tutorial.doxygen
o*OpenMS_Tutorial_html.doxygen
o*OpenMSInfo.C
o*OpenSwathAnalyzer.C
o*OpenSwathChromatogramExtractor.C
o*OpenSwathConfidenceScoring.C
o*OpenSwathDecoyGenerator.C
o*OpenSwathDIAPreScoring.C
o*OpenSwathFeatureXMLToTSV.C
o*OpenSwathHelper.h
o*OpenSwathMzMLFileCacher.C
o*OpenSwathRewriteToFeatureXML.C
o*OpenSwathRTNormalizer.C
o*OptimizePeakDeconvolution.h
o*OptimizePick.h
o*Param.h
o*ParamEditor.h
o*ParameterInformation.h
o*ParamXMLFile.h
o*ParamXMLHandler.h
o*ParentPeakMower.h
o*Peak1D.h
o*Peak2D.h
o*PeakAlignment.h
o*PeakFileOptions.h
o*PeakIndex.h
o*PeakIntensityPredictor.h
o*PeakMarker.h
o*PeakPickerCWT.h
o*PeakPickerHiRes.C
o*PeakPickerHiRes.h
o*PeakPickerSH.h
o*PeakPickerWavelet.C
o*PeakShape.h
o*PeakSpectrumCompareFunctor.h
o*PeakTypeEstimator.h
o*PeakWidthEstimator.h
o*PepIterator.h
o*PepNovoAdapter.C
o*PepNovoInfile.h
o*PepNovoOutfile.h
o*PeptideAndProteinQuant.h
o*PeptideEvidence.h
o*PeptideHit.h
o*PeptideHitVisualizer.h
o*PeptideIdentification.h
o*PeptideIdentificationVisualizer.h
o*PeptideIndexer.C
o*PepXMLFile.h
o*PepXMLFileMascot.h
o*PersistentObject.h
o*PhosphoScoring.C
o*PILISCrossValidation.h
o*PILISIdentification.C
o*PILISIdentification.h
o*PILISModel.h
o*PILISModelCV.C
o*PILISModelGenerator.h
o*PILISModelTrainer.C
o*PILISNeutralLossModel.h
o*PILISScoring.h
o*PILISSpectraGenerator.C
o*PoseClusteringAffineSuperimposer.h
o*PoseClusteringShiftSuperimposer.h
o*PosteriorErrorProbabilityModel.h
o*Precursor.h
o*PrecursorIonSelection.h
o*PrecursorIonSelectionPreprocessing.h
o*PrecursorIonSelector.C
o*PrecursorMassCorrector.C
o*PrecursorVisualizer.h
o*ProcessData.h
o*Product.h
o*ProductModel.h
o*ProductVisualizer.h
o*ProgressLogger.h
o*ProteinHit.h
o*ProteinHitVisualizer.h
o*ProteinIdentification.h
o*ProteinIdentificationVisualizer.h
o*ProteinInference.C
o*ProteinInference.h
o*ProteinQuantifier.C
o*ProteinResolver.C
o*ProteinResolver.h
o*ProtonDistributionModel.h
o*ProtXMLFile.h
o*PSLPFormulation.h
o*PSProteinInference.h
o*PTModel.C
o*PTMXMLFile.h
o*PTMXMLHandler.h
o*PTPredict.C
o*PyOpenMS.doxygen
o*QApplicationTOPP.C
o*QApplicationTOPP.h
o*QCCalculator.C
o*QCEmbedder.C
o*QCExporter.C
o*QCExtractor.C
o*QCImporter.C
o*QCMerger.C
o*QcMLFile.h
o*QCShrinker.C
o*QTCluster.h
o*QTClusterFinder.h
o*QuantitativeExperimentalDesign.h
o*QuickStart.doxygen
o*RangeManager.h
o*RangeUtils.h
o*RawData.h
o*RawMSSignalSimulation.h
o*RawTandemMSSignalSimulation.h
o*ReactionMonitoringTransition.h
o*RealMassDecomposer.h
o*Resampler.C
o*Residue.h
o*ResidueDB.h
o*ResidueModification.h
o*RichPeak1D.h
o*RichPeak2D.h
o*RNPxl.C
o*RNPxlXICFilter.C
o*ROCCurve.h
o*RTEvaluation.C
o*RTModel.C
o*RTPredict.C
o*RTSimulation.h
o*Sample.h
o*SampleTreatment.h
o*SampleVisualizer.h
o*SaveImageDialog.h
o*SavitzkyGolayFilter.h
o*Scaler.h
o*ScanWindow.h
o*ScanWindowVisualizer.h
o*Scoring.h
o*SeedListGenerator.C
o*SeedListGenerator.h
o*SemanticValidator.C
o*SemanticValidator.h
o*SeqanIncludeWrapper.h
o*SequenceCoverageCalculator.C
o*SequestAdapter.C
o*SequestInfile.h
o*SequestOutfile.h
o*SHFeature.h
o*SignalToNoiseEstimator.h
o*SignalToNoiseEstimatorMeanIterative.h
o*SignalToNoiseEstimatorMedian.h
o*SILACAnalyzer.C
o*SILACAnalyzer.h
o*SILACClustering.h
o*SILACFilter.h
o*SILACFiltering.h
o*SILACLabeler.h
o*SILACPattern.h
o*SILACPoint.h
o*SimpleExtender.h
o*SimpleOpenMSSpectraAccessFactory.h
o*SimplePairFinder.h
o*SimpleSeeder.h
o*SimTypes.h
o*SingleLinkage.h
o*SingletonRegistry.h
o*Software.h
o*SoftwareVisualizer.h
o*SourceFile.h
o*SourceFileVisualizer.h
o*SparseVector.h
o*SpecArrayFile.h
o*SpecLibCreator.C
o*SpecLibSearcher.C
o*SpectraFilterBernNorm.C
o*SpectraFilterMarkerMower.C
o*SpectraFilterNLargest.C
o*SpectraFilterNormalizer.C
o*SpectraFilterParentPeakMower.C
o*SpectraFilterScaler.C
o*SpectraFilterSqrtMower.C
o*SpectraFilterThresholdMower.C
o*SpectraFilterWindowMower.C
o*SpectraIdentificationViewWidget.h
o*SpectraMerger.C
o*SpectraMerger.h
o*SpectraSTSimilarityScore.h
o*SpectraViewWidget.h
o*Spectrum1DCanvas.h
o*Spectrum1DGoToDialog.h
o*Spectrum1DPrefDialog.h
o*Spectrum1DWidget.h
o*Spectrum2DCanvas.h
o*Spectrum2DGoToDialog.h
o*Spectrum2DPrefDialog.h
o*Spectrum2DWidget.h
o*Spectrum3DCanvas.h
o*Spectrum3DOpenGLCanvas.h
o*Spectrum3DPrefDialog.h
o*Spectrum3DWidget.h
o*SpectrumAccessOpenMS.h
o*SpectrumAccessOpenMSCached.h
o*SpectrumAddition.h
o*SpectrumAlignment.h
o*SpectrumAlignmentDialog.h
o*SpectrumAlignmentScore.h
o*SpectrumCanvas.h
o*SpectrumCheapDPCorr.h
o*SpectrumHelpers.h
o*SpectrumIdentification.h
o*SpectrumPrecursorComparator.h
o*SpectrumSettings.h
o*SpectrumSettingsVisualizer.h
o*SpectrumWidget.h
o*SqrtMower.h
o*StablePairFinder.h
o*StandardTypes.h
o*StatisticFunctions.h
o*StatsHelpers.h
o*SteinScottImproveScore.h
o*StopWatch.h
o*StreamHandler.h
o*String.h
o*StringList.h
o*SuffixArray.h
o*SuffixArrayPeptideFinder.h
o*SuffixArraySeqan.h
o*SuffixArrayTrypticCompressed.h
o*SuffixArrayTrypticSeqan.h
o*SuperHirnParameters.h
o*SuperHirnUtil.h
o*SvmTheoreticalSpectrumGenerator.h
o*SvmTheoreticalSpectrumGeneratorSet.h
o*SvmTheoreticalSpectrumGeneratorTrainer.C
o*SvmTheoreticalSpectrumGeneratorTrainer.h
o*SVMWrapper.h
o*SVOutStream.h
o*Tagging.h
o*TaggingVisualizer.h
o*TargetedExperiment.h
o*TargetedExperimentHelper.h
o*TextExporter.C
o*TextFile.h
o*TheoreticalSpectrumGenerationDialog.h
o*TheoreticalSpectrumGenerator.h
o*ThresholdMower.h
o*TICFilter.h
o*TMTAnalyzer.C
o*TMTSixPlexQuantitationMethod.h
o*TOFCalibration.C
o*TOFCalibration.h
o*ToolDescription.h
o*ToolDescriptionFile.h
o*ToolDescriptionHandler.h
o*ToolHandler.h
o*ToolsDialog.h
o*TOPP.doxygen
o*TOPP_advanced.doxygen
o*TOPP_concepts.doxygen
o*TOPP_scripting.doxygen
o*TOPP_Tutorial_html.doxygen
o*TOPPAS.C
o*TOPP_tutorial/TOPPAS.doxygen
o*doxygen/public/TOPPAS.doxygen
o*TOPPASBase.C
o*TOPPASBase.h
o*TOPPASEdge.h
o*TOPPASInputFileDialog.h
o*TOPPASInputFileListVertex.h
o*TOPPASInputFilesDialog.h
o*TOPPASIOMappingDialog.h
o*TOPPASLogWindow.h
o*TOPPASMergerVertex.h
o*TOPPASOutputFileListVertex.h
o*TOPPASOutputFilesDialog.h
o*TOPPASResource.h
o*TOPPASResources.h
o*TOPPASScene.h
o*TOPPASTabBar.h
o*TOPPASToolConfigDialog.h
o*TOPPASToolVertex.h
o*TOPPASTreeView.h
o*TOPPASVertex.h
o*TOPPASVertexNameDialog.h
o*TOPPASWidget.h
o*TOPPBase.h
o*TOPPView.C
o*TOPPView_calling_topp.doxygen
o*TOPPView_interface.doxygen
o*TOPPViewBase.C
o*TOPPViewBase.h
o*TOPPViewBehaviorInterface.h
o*TOPPViewIdentificationViewBehavior.h
o*TOPPViewOpenDialog.h
o*TOPPViewPrefDialog.h
o*TOPPViewSpectraViewBehavior.h
o*TraceFitter.h
o*TraMLFile.h
o*TraMLHandler.h
o*TraMLValidator.h
o*TransformationDescription.h
o*TransformationEvaluation.C
o*TransformationModel.h
o*TransformationXMLFile.h
o*TransitionExperiment.h
o*TransitionHelper.h
o*Transitions.h
o*TransitionTSVReader.h
o*TrypticIterator.h
o*TwoDOptimization.h
o*Types.h
o*UnaryComposeFunctionAdapter.h
o*UnimodXMLFile.h
o*UnimodXMLHandler.h
o*UniqueIdGenerator.h
o*UniqueIdIndexer.h
o*UniqueIdInterface.h
o*UTILS.doxygen
o*VersionInfo.h
o*Weights.h
o*WeightWrapper.h
o*WindowMower.h
o*XMassFile.h
o*XMLFile.h
o*XMLHandler.h
o*XMLValidator.C
o*XMLValidator.h
o*XTandemAdapter.C
o*XTandemInfile.h
o*XTandemInfileXMLHandler.h
o*XTandemXMLFile.h
\*ZhangSimilarityScore.h

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5