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InternalCalibration Member List

This is the complete list of members for InternalCalibration, including all inherited members.

applyTransformation_(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map)InternalCalibrationprotected
begin_ProgressLoggermutableprotected
calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses, String trafo_file_name="")InternalCalibration
calibrateMapGlobally(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="")InternalCalibration
calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, String trafo_file_name="")InternalCalibration
calibrateMapGlobally(const FeatureMap<> &feature_map, FeatureMap<> &calibrated_feature_map, std::vector< PeptideIdentification > &ref_ids, String trafo_file_name="")InternalCalibration
calibrateMapList(std::vector< MSExperiment< InputPeakType > > &exp_list, std::vector< MSExperiment< InputPeakType > > &calibrated_exp_list, std::vector< DoubleReal > &ref_masses, std::vector< DoubleReal > &detected_background_masses)InternalCalibration
calibrateMapSpectrumwise(const MSExperiment< InputPeakType > &exp, MSExperiment< InputPeakType > &calibrated_exp, std::vector< DoubleReal > &ref_masses)InternalCalibration
check_defaults_DefaultParamHandlerprotected
checkReferenceIds_(std::vector< PeptideIdentification > &pep_ids)InternalCalibrationprotected
checkReferenceIds_(const FeatureMap<> &feature_map)InternalCalibrationprotected
CMD enum valueProgressLogger
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
getDefaults() const DefaultParamHandler
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
GUI enum valueProgressLogger
InternalCalibration()InternalCalibration
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
makeLinearRegression_(std::vector< DoubleReal > &observed_masses, std::vector< DoubleReal > &theoretical_masses)InternalCalibrationprotected
NONE enum valueProgressLogger
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
subsections_DefaultParamHandlerprotected
trafo_InternalCalibrationprotected
type_ProgressLoggermutableprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
value_ProgressLoggermutableprotected
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~InternalCalibration()InternalCalibrationinline
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:29 using doxygen 1.8.5