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ConfidenceScoring Member List

This is the complete list of members for ConfidenceScoring, including all inherited members.

begin_ProgressLoggermutableprotected
BimapType typedefConfidenceScoringprotected
chooseDecoys_()ConfidenceScoringprotected
CMD enum valueProgressLogger
ConfidenceScoring(bool test_mode_=false)ConfidenceScoringinline
decoy_index_ConfidenceScoringprotected
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
extractIntensities_(BimapType &intensity_map, Size n_transitions, DoubleList &intensities)ConfidenceScoringprotected
generator_ConfidenceScoringprotected
getAssayRT_(const TargetedExperiment::Peptide &assay, const String &cv_accession="MS:1000896")ConfidenceScoringprotected
getLogType() const ProgressLogger
glm_ConfidenceScoringprotected
GUI enum valueProgressLogger
initialize(TargetedExperiment library, Size n_decoys, Size n_transitions, TransformationDescription rt_trafo)ConfidenceScoringinline
initializeGlm(double intercept, double rt_coef, double int_coef)ConfidenceScoringinline
int_coefConfidenceScoring
interceptConfidenceScoring
last_invoke_ProgressLoggermutableprotected
library_ConfidenceScoringprotected
LogType enum nameProgressLogger
manhattanDist_(DoubleList x, DoubleList y)ConfidenceScoringprotected
max_rtConfidenceScoring
min_rtConfidenceScoring
n_decoys_ConfidenceScoringprotected
n_transitions_ConfidenceScoringprotected
NONE enum valueProgressLogger
ProgressLogger()ProgressLogger
rand_gen_ConfidenceScoringprotected
recursion_depth_ProgressLoggerprotectedstatic
rt_coefConfidenceScoring
rt_norm_ConfidenceScoringprotected
rt_trafo_ConfidenceScoringprotected
scoreAssay_(const TargetedExperiment::Peptide &assay, DoubleReal feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >())ConfidenceScoringprotected
scoreFeature_(Feature &feature)ConfidenceScoringprotected
scoreMap(FeatureMap<> &features)ConfidenceScoringinline
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
transition_map_ConfidenceScoringprotected
type_ProgressLoggermutableprotected
value_ProgressLoggermutableprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5