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SvmTheoreticalSpectrumGeneratorSet.h
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34 
35 
36 #ifndef OPENMS_CHEMISTRY_SVMTHEORETICALSPECTRUMGENERATORSET_H
37 #define OPENMS_CHEMISTRY_SVMTHEORETICALSPECTRUMGENERATORSET_H
38 
42 
43 namespace OpenMS
44 {
59  {
60 public:
61 
67 
70 
74 
77 
79  void simulate(RichPeakSpectrum & spectrum, const AASequence & peptide, const gsl_rng * rng, Size precursor_charge);
80 
82  void load(String);
83 
85  void getSupportedCharges(std::set<Size> & charges);
86 
89 
90 protected:
91  //map containing the simulator for each charge variant
92  std::map<Size, SvmTheoreticalSpectrumGenerator> simulators_;
93 
94  };
95 
96 
97 }
98 
99 
100 
101 #endif
A more convenient string class.
Definition: String.h:56
Loads SvmTheoreticalSpectrumGenerator instances for different charges.
Definition: SvmTheoreticalSpectrumGeneratorSet.h:58
Representation of a peptide/protein sequence.
Definition: AASequence.h:84
Simulates ms2 spectra with support vector machines.
Definition: SvmTheoreticalSpectrumGenerator.h:69
std::map< Size, SvmTheoreticalSpectrumGenerator > simulators_
Definition: SvmTheoreticalSpectrumGeneratorSet.h:92
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:144

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:21 using doxygen 1.8.5