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ILPDCWrapper.h
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34 
35 #ifndef OPENMS_ANALYSIS_DECHARGING_ILPDCWRAPPER_H
36 #define OPENMS_ANALYSIS_DECHARGING_ILPDCWRAPPER_H
37 
38 #include <vector>
40 
41 
42 namespace OpenMS
43 {
44 
45  class MassExplainer;
46 
47  class OPENMS_DLLAPI ILPDCWrapper
48  {
49 
50 public:
51  typedef std::vector<ChargePair> PairsType;
52  typedef PairsType::size_type PairsIndex;
53 
55  ILPDCWrapper();
56 
58  virtual ~ILPDCWrapper();
59 
64  DoubleReal compute(const FeatureMap<> fm, PairsType & pairs, Size verbose_level) const;
65 
66 private:
67 
69  DoubleReal computeSlice_(const FeatureMap<> fm,
70  PairsType & pairs,
71  const PairsIndex margin_left,
72  const PairsIndex margin_right,
73  const Size verbose_level) const;
74 
76  DoubleReal computeSliceOld_(const FeatureMap<> fm,
77  PairsType & pairs,
78  const PairsIndex margin_left,
79  const PairsIndex margin_right,
80  const Size verbose_level) const;
81 
83  DoubleReal getLogScore_(const PairsType::value_type & pair, const FeatureMap<> & fm) const;
84 
86 
87  // add another charge annotation variant for a feature
88  void updateFeatureVariant_(FeatureType_ & f_set, const String & rota_l, const Size & v) const;
89 
90 
91 
92  }; // !class
93 
94 } // !namespace
95 
96 #endif // OPENMS_ANALYSIS_DECHARGING_ILPDCWRAPPER_H
PairsType::size_type PairsIndex
Definition: ILPDCWrapper.h:52
A more convenient string class.
Definition: String.h:56
Definition: ILPDCWrapper.h:47
Map< String, std::set< Size > > FeatureType_
Definition: ILPDCWrapper.h:85
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:144
std::vector< ChargePair > PairsType
Definition: ILPDCWrapper.h:51
Map class based on the STL map (containing serveral convenience functions)
Definition: Map.h:50

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:15 using doxygen 1.8.5