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PILISNeutralLossModel Member List

This is the complete list of members for PILISNeutralLossModel, including all inherited members.

check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
enableIonStates_(const AASequence &peptide)PILISNeutralLossModelprotected
error_name_DefaultParamHandlerprotected
evaluate()PILISNeutralLossModel
generateModel()PILISNeutralLossModel
getDefaults() const DefaultParamHandler
getHMM() const PILISNeutralLossModel
getIntensitiesFromSpectrum_(const RichPeakSpectrum &train_spec, Map< String, DoubleReal > &pre_ints, DoubleReal ion_weight, const AASequence &peptide, UInt charge)PILISNeutralLossModelprotected
getIons(std::vector< RichPeak1D > &peaks, const AASequence &peptide, DoubleReal initial_prob)PILISNeutralLossModel
getIons_(Map< String, DoubleReal > &intensities, DoubleReal initial_probability, const AASequence &precursor)PILISNeutralLossModelprotected
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
hmm_precursor_PILISNeutralLossModelprotected
num_explicit_PILISNeutralLossModelprotected
operator=(const PILISNeutralLossModel &mode)PILISNeutralLossModel
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PILISNeutralLossModel()PILISNeutralLossModel
PILISNeutralLossModel(const PILISNeutralLossModel &model)PILISNeutralLossModel
PILISNeutralLossModelGenerator classPILISNeutralLossModelfriend
setHMM(const HiddenMarkovModel &model)PILISNeutralLossModel
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
train(const RichPeakSpectrum &spec, const AASequence &peptide, DoubleReal ion_weight, UInt charge, DoubleReal peptide_weight)PILISNeutralLossModel
trainIons_(DoubleReal initial_probability, const Map< String, DoubleReal > &intensities, const AASequence &peptide)PILISNeutralLossModelprotected
updateMembers_()PILISNeutralLossModelprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~PILISNeutralLossModel()PILISNeutralLossModelvirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5