ActionMode enum name | XMLHandler | |
asBool_(const String &in) | XMLHandler | inlineprotected |
asDateTime_(String date_string) | XMLHandler | inlineprotected |
asDouble_(const String &in) | XMLHandler | inlineprotected |
asFloat_(const String &in) | XMLHandler | inlineprotected |
asInt_(const String &in) | XMLHandler | inlineprotected |
asInt_(const XMLCh *in) | XMLHandler | inlineprotected |
asUInt_(const String &in) | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
cexp_ | MzMLHandler< MapType > | protected |
characters(const XMLCh *const chars, const XMLSize_t length) | MzMLHandler< MapType > | virtual |
chromatogram_ | MzMLHandler< MapType > | protected |
ChromatogramPeakType typedef | MzMLHandler< MapType > | protected |
ChromatogramType typedef | MzMLHandler< MapType > | protected |
current_id_ | MzMLHandler< MapType > | protected |
cv_ | MzMLHandler< MapType > | protected |
cv_terms_ | XMLHandler | protected |
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0) | XMLHandler | inlineprotected |
data_ | MzMLHandler< MapType > | protected |
decoder_ | MzMLHandler< MapType > | protected |
default_array_length_ | MzMLHandler< MapType > | protected |
default_processing_ | MzMLHandler< MapType > | protected |
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname) | MzMLHandler< MapType > | virtual |
equal_(const XMLCh *a, const XMLCh *b) | XMLHandler | inlineprotected |
error(const xercesc::SAXParseException &exception) | XMLHandler | |
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
error_message_ | XMLHandler | mutableprotected |
errorString() | XMLHandler | |
exp_ | MzMLHandler< MapType > | protected |
fatalError(const xercesc::SAXParseException &exception) | XMLHandler | |
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
file_ | XMLHandler | protected |
fillChromatogramData_() | MzMLHandler< MapType > | protected |
fillData_() | MzMLHandler< MapType > | protected |
getChildWithName_(const String &parent_accession, const String &name) const | MzMLHandler< MapType > | protected |
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="") | MzMLHandler< MapType > | protected |
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value) | MzMLHandler< MapType > | protected |
in_spectrum_list_ | MzMLHandler< MapType > | protected |
instruments_ | MzMLHandler< MapType > | protected |
LOAD enum value | XMLHandler | |
logger_ | MzMLHandler< MapType > | protected |
mapping_ | MzMLHandler< MapType > | protected |
MzMLHandler(MapType &exp, const String &filename, const String &version, ProgressLogger &logger) | MzMLHandler< MapType > | inline |
MzMLHandler(const MapType &exp, const String &filename, const String &version, const ProgressLogger &logger) | MzMLHandler< MapType > | inline |
open_tags_ | XMLHandler | protected |
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const | XMLHandler | inlineprotected |
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const | XMLHandler | inlineprotected |
options_ | MzMLHandler< MapType > | protected |
PeakType typedef | MzMLHandler< MapType > | protected |
processing_ | MzMLHandler< MapType > | protected |
ref_param_ | MzMLHandler< MapType > | protected |
reset() | XMLHandler | |
samples_ | MzMLHandler< MapType > | protected |
selected_ion_count_ | MzMLHandler< MapType > | protected |
setOptions(const PeakFileOptions &opt) | MzMLHandler< MapType > | inline |
skip_spectrum_ | MzMLHandler< MapType > | protected |
sm_ | XMLHandler | protected |
software_ | MzMLHandler< MapType > | protected |
source_files_ | MzMLHandler< MapType > | protected |
spec_ | MzMLHandler< MapType > | protected |
SpectrumType typedef | MzMLHandler< MapType > | protected |
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes) | MzMLHandler< MapType > | virtual |
STORE enum value | XMLHandler | |
validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) const | MzMLHandler< MapType > | protected |
version_ | XMLHandler | protected |
warning(const xercesc::SAXParseException &exception) | XMLHandler | |
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const | XMLHandler | |
writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size c, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) const | MzMLHandler< MapType > | protected |
writeDataProcessing_(std::ostream &os, const String &id, const std::vector< DataProcessing > &dps, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeFooter_(std::ostream &os) | MzMLHandler< MapType > | protected |
writeHeader_(std::ostream &os, const MapType &exp, std::vector< std::vector< DataProcessing > > &dps, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writePrecursor_(std::ostream &os, const Precursor &precursor, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeProduct_(std::ostream &os, const Product &product, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeSoftware_(std::ostream &os, const String &id, const Software &software, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, Internal::MzMLValidator &validator) | MzMLHandler< MapType > | protected |
writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size s, Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< DataProcessing > > &dps) | MzMLHandler< MapType > | protected |
writeTo(std::ostream &os) | MzMLHandler< MapType > | virtual |
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, String path, Internal::MzMLValidator &validator) const | MzMLHandler< MapType > | protected |
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const | XMLHandler | protected |
XMLHandler(const String &filename, const String &version) | XMLHandler | |
~MzMLHandler() | MzMLHandler< MapType > | inlinevirtual |
~XMLHandler() | XMLHandler | virtual |