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MzMLHandler< MapType > Member List

This is the complete list of members for MzMLHandler< MapType >, including all inherited members.

ActionMode enum nameXMLHandler
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
cexp_MzMLHandler< MapType >protected
characters(const XMLCh *const chars, const XMLSize_t length)MzMLHandler< MapType >virtual
chromatogram_MzMLHandler< MapType >protected
ChromatogramPeakType typedefMzMLHandler< MapType >protected
ChromatogramType typedefMzMLHandler< MapType >protected
current_id_MzMLHandler< MapType >protected
cv_MzMLHandler< MapType >protected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
data_MzMLHandler< MapType >protected
decoder_MzMLHandler< MapType >protected
default_array_length_MzMLHandler< MapType >protected
default_processing_MzMLHandler< MapType >protected
endElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname)MzMLHandler< MapType >virtual
equal_(const XMLCh *a, const XMLCh *b)XMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception)XMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
exp_MzMLHandler< MapType >protected
fatalError(const xercesc::SAXParseException &exception)XMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
file_XMLHandlerprotected
fillChromatogramData_()MzMLHandler< MapType >protected
fillData_()MzMLHandler< MapType >protected
getChildWithName_(const String &parent_accession, const String &name) const MzMLHandler< MapType >protected
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const String &unit_accession="")MzMLHandler< MapType >protected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)MzMLHandler< MapType >protected
in_spectrum_list_MzMLHandler< MapType >protected
instruments_MzMLHandler< MapType >protected
LOAD enum valueXMLHandler
logger_MzMLHandler< MapType >protected
mapping_MzMLHandler< MapType >protected
MzMLHandler(MapType &exp, const String &filename, const String &version, ProgressLogger &logger)MzMLHandler< MapType >inline
MzMLHandler(const MapType &exp, const String &filename, const String &version, const ProgressLogger &logger)MzMLHandler< MapType >inline
open_tags_XMLHandlerprotected
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDouble_(DoubleReal &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const XMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const XMLHandlerinlineprotected
options_MzMLHandler< MapType >protected
PeakType typedefMzMLHandler< MapType >protected
processing_MzMLHandler< MapType >protected
ref_param_MzMLHandler< MapType >protected
reset()XMLHandler
samples_MzMLHandler< MapType >protected
selected_ion_count_MzMLHandler< MapType >protected
setOptions(const PeakFileOptions &opt)MzMLHandler< MapType >inline
skip_spectrum_MzMLHandler< MapType >protected
sm_XMLHandlerprotected
software_MzMLHandler< MapType >protected
source_files_MzMLHandler< MapType >protected
spec_MzMLHandler< MapType >protected
SpectrumType typedefMzMLHandler< MapType >protected
startElement(const XMLCh *const , const XMLCh *const , const XMLCh *const qname, const xercesc::Attributes &attributes)MzMLHandler< MapType >virtual
STORE enum valueXMLHandler
validateCV_(const ControlledVocabulary::CVTerm &c, const String &path, const Internal::MzMLValidator &validator) const MzMLHandler< MapType >protected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception)XMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const XMLHandler
writeChromatogram_(std::ostream &os, const ChromatogramType &chromatogram, Size c, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeCV_(const ControlledVocabulary::CVTerm &c, const DataValue &metaValue) const MzMLHandler< MapType >protected
writeDataProcessing_(std::ostream &os, const String &id, const std::vector< DataProcessing > &dps, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeFooter_(std::ostream &os)MzMLHandler< MapType >protected
writeHeader_(std::ostream &os, const MapType &exp, std::vector< std::vector< DataProcessing > > &dps, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writePrecursor_(std::ostream &os, const Precursor &precursor, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeProduct_(std::ostream &os, const Product &product, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeSoftware_(std::ostream &os, const String &id, const Software &software, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeSourceFile_(std::ostream &os, const String &id, const SourceFile &software, Internal::MzMLValidator &validator)MzMLHandler< MapType >protected
writeSpectrum_(std::ostream &os, const SpectrumType &spec, Size s, Internal::MzMLValidator &validator, bool renew_native_ids, std::vector< std::vector< DataProcessing > > &dps)MzMLHandler< MapType >protected
writeTo(std::ostream &os)MzMLHandler< MapType >virtual
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent, String path, Internal::MzMLValidator &validator) const MzMLHandler< MapType >protected
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const XMLHandlerprotected
XMLHandler(const String &filename, const String &version)XMLHandler
~MzMLHandler()MzMLHandler< MapType >inlinevirtual
~XMLHandler()XMLHandlervirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:37 using doxygen 1.8.5