Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
ProteinIdentificationVisualizer.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2013.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Marc Sturm $
33 // --------------------------------------------------------------------------
34 
35 #ifndef OPENMS_VISUAL_VISUALIZER_PROTEINIDENTIFICATIONVISUALIZER_H
36 #define OPENMS_VISUAL_VISUALIZER_PROTEINIDENTIFICATIONVISUALIZER_H
37 
38 //OpenMS
42 
43 
44 namespace OpenMS
45 {
46  class MetaDataBrowser;
47 
53  class OPENMS_GUI_DLLAPI ProteinIdentificationVisualizer :
54  public BaseVisualizerGUI,
55  public BaseVisualizer<ProteinIdentification>
56  {
57  Q_OBJECT
58 
59 public:
61  ProteinIdentificationVisualizer(bool editable = FALSE, QWidget * parent = 0, MetaDataBrowser * caller = 0);
62 
64  void load(ProteinIdentification & s, int tree_item_id);
65 
66 public slots:
67 
68  //Docu in base class
69  void store();
70 
71 protected slots:
72 
80  void updateTree_();
81 
83  void undo_();
84 
85 protected:
86 
90  int tree_id_;
91 
93 
100  QComboBox * higher_better_;
101 
109  QComboBox * mass_type_;
110  QComboBox * enzyme_;
112 
115  };
116 }
117 #endif //OPENMS_VISUAL_VISUALIZER_PROTEINIDENTIFICATIONVISUALIZER_H
Representation of a protein identification run.
Definition: ProteinIdentification.h:61
QLineEdit * charges_
Definition: ProteinIdentificationVisualizer.h:105
QLineEdit * score_type_
Definition: ProteinIdentificationVisualizer.h:99
QLineEdit * engine_
Definition: ProteinIdentificationVisualizer.h:94
QLineEdit * missed_cleavages_
Definition: ProteinIdentificationVisualizer.h:106
A base class for all visualizer classes.
Definition: BaseVisualizer.h:53
A base class for all visualizer classes.
Definition: BaseVisualizerGUI.h:63
QLineEdit * identifier_
Definition: ProteinIdentificationVisualizer.h:98
QLineEdit * precursor_tolerance_
Definition: ProteinIdentificationVisualizer.h:108
QLineEdit * peak_tolerance_
Definition: ProteinIdentificationVisualizer.h:107
A meta data visualization widget.
Definition: MetaDataBrowser.h:101
Class that displays all meta information for ProteinIdentification objects.
Definition: ProteinIdentificationVisualizer.h:53
QLineEdit * identification_date_
Definition: ProteinIdentificationVisualizer.h:96
QLineEdit * identification_threshold_
Definition: ProteinIdentificationVisualizer.h:97
int tree_id_
The id of the item in the tree.
Definition: ProteinIdentificationVisualizer.h:90
MetaDataBrowser * pidv_caller_
Pointer to MetaDataBrowser.
Definition: ProteinIdentificationVisualizer.h:88
QComboBox * higher_better_
Definition: ProteinIdentificationVisualizer.h:100
QLineEdit * filter_threshold_
Threshold for foltering by score.
Definition: ProteinIdentificationVisualizer.h:114
QLineEdit * db_version_
Definition: ProteinIdentificationVisualizer.h:103
QComboBox * mass_type_
Definition: ProteinIdentificationVisualizer.h:109
QLineEdit * db_
Definition: ProteinIdentificationVisualizer.h:102
QLineEdit * engine_version_
Definition: ProteinIdentificationVisualizer.h:95
QLineEdit * taxonomy_
Definition: ProteinIdentificationVisualizer.h:104
QComboBox * enzyme_
Definition: ProteinIdentificationVisualizer.h:110

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:19 using doxygen 1.8.5