This is the complete list of members for PILISNeutralLossModel, including all inherited members.
check_defaults_ | DefaultParamHandler | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
enableIonStates_(const AASequence &peptide) | PILISNeutralLossModel | protected |
error_name_ | DefaultParamHandler | protected |
evaluate() | PILISNeutralLossModel | |
generateModel() | PILISNeutralLossModel | |
getDefaults() const | DefaultParamHandler | |
getHMM() const | PILISNeutralLossModel | |
getIntensitiesFromSpectrum_(const RichPeakSpectrum &train_spec, Map< String, DoubleReal > &pre_ints, DoubleReal ion_weight, const AASequence &peptide, UInt charge) | PILISNeutralLossModel | protected |
getIons(std::vector< RichPeak1D > &peaks, const AASequence &peptide, DoubleReal initial_prob) | PILISNeutralLossModel | |
getIons_(Map< String, DoubleReal > &intensities, DoubleReal initial_probability, const AASequence &precursor) | PILISNeutralLossModel | protected |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
hmm_precursor_ | PILISNeutralLossModel | protected |
num_explicit_ | PILISNeutralLossModel | protected |
operator=(const PILISNeutralLossModel &mode) | PILISNeutralLossModel | |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
PILISNeutralLossModel() | PILISNeutralLossModel | |
PILISNeutralLossModel(const PILISNeutralLossModel &model) | PILISNeutralLossModel | |
PILISNeutralLossModelGenerator class | PILISNeutralLossModel | friend |
setHMM(const HiddenMarkovModel &model) | PILISNeutralLossModel | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
subsections_ | DefaultParamHandler | protected |
train(const RichPeakSpectrum &spec, const AASequence &peptide, DoubleReal ion_weight, UInt charge, DoubleReal peptide_weight) | PILISNeutralLossModel | |
trainIons_(DoubleReal initial_probability, const Map< String, DoubleReal > &intensities, const AASequence &peptide) | PILISNeutralLossModel | protected |
updateMembers_() | PILISNeutralLossModel | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PILISNeutralLossModel() | PILISNeutralLossModel | virtual |