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- e -
edgesBegin() :
TOPPASScene
edgesEnd() :
TOPPASScene
edit() :
ParamTree
editCurrentItem() :
TOPPASInputFilesDialog
editMetadata() :
TOPPViewBase
editParam() :
TOPPASToolVertex
EDTAFile() :
EDTAFile
EdwardsLippertIterator() :
EdwardsLippertIterator
EdwardsLippertIteratorTryptic() :
EdwardsLippertIteratorTryptic
EGHFitter1D() :
EGHFitter1D
EGHModel() :
EGHModel
EGHTraceFitter() :
EGHTraceFitter< PeakType >
Element() :
Element
ElementDB() :
ElementDB
ElementNotFound() :
ElementNotFound
elutionModelFit() :
EmgScoring
ElutionPeakDetection() :
ElutionPeakDetection
EmgFitter1D() :
EmgFitter1D
EmgModel() :
EmgModel
EmgScoring() :
EmgScoring
emitChanged() :
TOPPASEdge
emitToolStarted() :
TOPPASToolVertex
EmpiricalFormula() :
EmpiricalFormula
empty() :
AASequence
,
IMSIsotopeDistribution
,
HashGrid< Cluster >
,
ConstRefVector< ContainerT >
,
Param
,
SparseVector< Value >
,
ConsensusFeature
,
MSExperiment< PeakT, ChromatogramPeakT >
,
BilinearInterpolation< Key, Value >
,
LinearInterpolation< Key, Value >
,
CVTermList
,
MetaInfo
,
PeptideIdentification
,
File
enable_() :
ToolsDialog
enableFeatureNumber() :
Spectrum2DGoToDialog
enableIonStates_() :
PILISNeutralLossModel
enableLogging_() :
TOPPBase
enableTransition() :
HiddenMarkovModel
enableTransition_() :
HiddenMarkovModel
encloses() :
ConvexHull2D
,
DBoundingBox< D >
,
DRange< D >
,
Feature
encode() :
Base64
encodeCompositionVector() :
LibSVMEncoder
encodeCompositionVectors() :
LibSVMEncoder
encodeIntegers() :
Base64
encodeLibSVMProblem() :
LibSVMEncoder
encodeLibSVMProblemWithCompositionAndLengthVectors() :
LibSVMEncoder
encodeLibSVMProblemWithCompositionLengthAndWeightVectors() :
LibSVMEncoder
encodeLibSVMProblemWithCompositionVectors() :
LibSVMEncoder
encodeLibSVMProblemWithOligoBorderVectors() :
LibSVMEncoder
encodeLibSVMVector() :
LibSVMEncoder
encodeLibSVMVectors() :
LibSVMEncoder
encodeOligo() :
LibSVMEncoder
encodeOligoBorders() :
LibSVMEncoder
encodeProblemWithOligoBorderVectors() :
LibSVMEncoder
encodeStrings() :
Base64
end() :
AASequence
,
EmpiricalFormula
,
IsotopeDistribution
,
HashGrid< Cluster >
,
BinnedSpectrum
,
ConstRefVector< ContainerT >
,
DPosition< D, TCoordinateType >
,
Param
,
SparseVector< Value >
,
ConsensusFeature
,
MassTrace
,
MSExperiment< PeakT, ChromatogramPeakT >
,
Histogram< ValueType, BinSizeType >
,
IsotopeWaveletTransform< PeakType >::TransSpectrum
endElement() :
ConsensusXMLFile
,
CVMappingFile
,
FeatureXMLFile
,
MascotXMLHandler
,
MzDataHandler< MapType >
,
MzIdentMLHandler
,
MzMLHandler< MapType >
,
MzQuantMLHandler
,
MzXMLHandler< MapType >
,
ParamXMLHandler
,
PTMXMLHandler
,
ToolDescriptionHandler
,
TraMLHandler
,
UnimodXMLHandler
,
XMLHandler
,
XTandemInfileXMLHandler
,
IdXMLFile
,
OMSSAXMLFile
,
PepXMLFile
,
PepXMLFileMascot
,
ProtXMLFile
,
QcMLFile
,
SemanticValidator
,
XTandemXMLFile
EndParsingSoftly() :
XMLHandler::EndParsingSoftly
endPos() :
TOPPASEdge
endProgress() :
ProgressLogger
endResidue() :
ResidueDB
endRun_() :
MascotRemoteQuery
enforceEncoding_() :
XMLFile
EnhancedTabBar() :
EnhancedTabBar
EnhancedWorkspace() :
EnhancedWorkspace
enhancedWorkspaceWindowChanged() :
TOPPViewBase
enlarge() :
DBoundingBox< D >
enqueueProcess() :
TOPPASScene
ensureAnnotationsWithinDataRange_() :
Spectrum1DCanvas
ensureLastChar() :
String
ensureUniqueId() :
UniqueIdInterface
ensureWithinDataRange() :
Annotation1DDistanceItem
,
Annotation1DPeakItem
,
Annotation1DTextItem
,
Annotation1DItem
enterEvent() :
SpectrumCanvas
,
TOPPASTreeView
,
TOPPASWidget
entirePipelineFinished() :
TOPPASScene
EnzymaticDigestion() :
EnzymaticDigestion
equal_() :
XMLHandler
EqualInTolerance() :
EqualInTolerance< CompareType >
erase() :
IMSAlphabet
,
HashGrid< Cluster >
,
ConstRefVector< ContainerT >
,
SparseVector< Value >
,
HashGrid< Cluster >
,
SparseVector< Value >
erase_match_list() :
SHFeature
erase_MZ_cluster_element() :
ProcessData
erase_MZ_LIST_element() :
ProcessData
eraseFloatDataArrayEntry_() :
MapAlignmentAlgorithmSpectrumAlignment
error() :
XMLHandler
,
XMLValidator
errorString() :
XMLHandler
estimate_() :
SignalToNoiseEstimator< Container >
estimateFromPeptideWeight() :
IsotopeDistribution
estimateFWHM() :
PeakWidthEstimator
,
MassTrace
estimateNoiseFromRandomMS1Scans() :
TOPPViewBase
estimatePeakWidth() :
SILACAnalyzer
,
PeakPickerCWT
estimatePrecursorWeight_() :
CompNovoIdentification
,
CompNovoIdentificationBase
estimateSpectrumFWHM() :
PeakWidthEstimator
estimateType() :
PeakTypeEstimator
estimateUntrainedTransitions() :
HiddenMarkovModel
EuclideanSimilarity() :
EuclideanSimilarity
evaluate() :
TransformationModelInterpolated
,
HiddenMarkovModel
,
MapAlignmentEvaluationAlgorithm
,
PILISModel
,
MapAlignmentEvaluationAlgorithmRecall
,
TransformationModelBSpline
,
PILISNeutralLossModel
,
TransformationModel
,
TransformationModelLinear
,
MapAlignmentEvaluationAlgorithmPrecision
evaluate2D_() :
TwoDOptimization
evaluate_() :
EGHTraceFitter< PeakType >
,
LmaIsotopeFitter1D
,
LmaGaussFitter1D
,
GaussTraceFitter< PeakType >
,
EGHFitter1D
,
EmgFitter1D
,
ModelFitter< PeakType, FeatureType >
evaluateEGH_() :
EGHModel
event() :
QApplicationTOPP
execQuery() :
MascotRemoteQuery
executeQueries() :
DBConnection
executeQuery() :
DBConnection
executionFinished() :
TOPPASToolVertex
exist() :
MassDecomposer< ValueType, DecompositionValueType >
,
IntegerMassDecomposer< ValueType, DecompositionValueType >
exists() :
MultiGradient
,
MetaInfo
,
File
,
Param
,
ControlledVocabulary
exists_() :
ParamEditorDelegate
existsRun() :
QcMLFile
existsRunQualityParameter() :
QcMLFile
existsSet() :
QcMLFile
existsSetQualityParameter() :
QcMLFile
expandPrefix_() :
LogStreamBuf
expandToBoundingBox() :
ConvexHull2D
expectList_() :
XMLHandler
ExperimentalSettings() :
ExperimentalSettings
ExperimentalSettingsVisualizer() :
ExperimentalSettingsVisualizer
exportAsImage() :
TOPPASBase
,
IDEvaluationBase
exportAttachment() :
QcMLFile
exportEntries_() :
SpectraIdentificationViewWidget
exportIDstats() :
QcMLFile
exportMzTab_() :
AccurateMassSearchEngine
exportQP() :
QcMLFile
exportQPs() :
QcMLFile
extend() :
SimpleExtender< PeakType, FeatureType >
extendBox_() :
IsotopeWaveletTransform< PeakType >
ExtendedIsotopeFitter1D() :
ExtendedIsotopeFitter1D
ExtendedIsotopeModel() :
ExtendedIsotopeModel
extendMassTrace_() :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
extendMassTraces_() :
FeatureFinderAlgorithmPicked< PeakType, FeatureType >
extract_elution_peaks() :
ProcessData
extract_MS2_elution_features() :
FTPeakDetectController
extract_value_bartlett() :
ChromatogramExtractor
extract_value_tophat() :
ChromatogramExtractor
extractChannels() :
IsobaricChannelExtractor
extractChromatograms() :
ChromatogramExtractor
extractFragmentsFromSpectra() :
ClusteredMS2ConsensusSpectrum
extractIntensities_() :
ConfidenceScoring
extractIntensityVectors() :
ConsensusMapNormalizerAlgorithmQuantile
extractMarkerIons() :
MarkerIonExtractor
extractMzShiftsAndIntensities_() :
SILACFilter
extractMzShiftsAndIntensitiesPicked_() :
SILACFilter
extractMzShiftsAndIntensitiesPickedToPattern_() :
SILACFilter
extractNumberOfSubSamples_() :
MzTabFile
extractNumPeptides_() :
MzTabFile
extractNumPeptidesDistinct_() :
MzTabFile
extractNumPeptidesUnambiguous_() :
MzTabFile
extractPeaks() :
FeatureFinderAlgorithmSHCtrl
extractPeptideModifications_() :
MzTabFile
extractProteinAccession_() :
MzTabFile
OpenMS / TOPP release 1.11.1
Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5