Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU and avoids unnecessary memory moves. The class is tailored on the isotope wavelet transform and is in general not applicable on similar - but different - situations. More...
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h>
Public Member Functions | |
TransSpectrum () | |
TransSpectrum (const MSSpectrum< PeakType > *reference) | |
virtual | ~TransSpectrum () |
virtual void | destroy () |
DoubleReal | getRT () const |
DoubleReal | getMZ (const UInt i) const |
DoubleReal | getRefIntensity (const UInt i) const |
DoubleReal | getTransIntensity (const UInt i) const |
void | setTransIntensity (const UInt i, const DoubleReal intens) |
Size | size () const |
const MSSpectrum< PeakType > * | getRefSpectrum () |
const MSSpectrum< PeakType > * | getRefSpectrum () const |
MSSpectrum< PeakType > ::const_iterator | MZBegin (const DoubleReal mz) const |
MSSpectrum< PeakType > ::const_iterator | MZEnd (const DoubleReal mz) const |
MSSpectrum< PeakType > ::const_iterator | end () const |
MSSpectrum< PeakType > ::const_iterator | begin () const |
Protected Attributes | |
const MSSpectrum< PeakType > * | reference_ |
std::vector< float > * | trans_intens_ |
Friends | |
class | IsotopeWaveletTransform |
Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU and avoids unnecessary memory moves. The class is tailored on the isotope wavelet transform and is in general not applicable on similar - but different - situations.
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Default constructor
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Copy constructor
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_, and IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
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Destructor
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
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Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
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References NULL, IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_, and IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), and FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run().
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Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_().
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Returns the mass-over-charge ratio at index i
.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
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Returns the reference (non-transformed) intensity at index i
.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), and FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run().
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Returns a pointer to the reference spectrum.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
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Returns a pointer to the reference spectrum.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
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Returns the RT value (not the index) of the associated scan.
References MSSpectrum< PeakT >::getRT(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
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Returns the transformed intensity at index i
.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletTransform< PeakType >::getAvIntens_(), IsotopeWaveletTransform< PeakType >::getSdIntens_(), IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
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Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References MSSpectrum< PeakT >::MZBegin(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
Referenced by IsotopeWaveletTransform< PeakType >::checkPositionForPlausibility_(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
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Attention: iterations will only performed over the reference spectrum. You will have to use the "distance"-function in order to get the corresponding entry of the transform.
References MSSpectrum< PeakT >::MZEnd(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::reference_.
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Stores the intensity value i
of the transform at position i
.
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Returns the size of spectra.
References IsotopeWaveletTransform< PeakType >::TransSpectrum::trans_intens_.
Referenced by IsotopeWaveletTransform< PeakType >::getAvIntens_(), IsotopeWaveletTransform< PeakType >::getSdIntens_(), IsotopeWaveletParallelFor< PeakType, FeatureType >::operator()(), FeatureFinderAlgorithmIsotopeWavelet< OpenMS::Peak2D, FeatureType >::run(), and IsotopeWaveletTransform< PeakType >::scoreThis_().
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Referenced by IsotopeWaveletTransform< PeakType >::TransSpectrum::begin(), IsotopeWaveletTransform< PeakType >::TransSpectrum::destroy(), IsotopeWaveletTransform< PeakType >::TransSpectrum::end(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getMZ(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRefIntensity(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRefSpectrum(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getRT(), IsotopeWaveletTransform< PeakType >::TransSpectrum::MZBegin(), IsotopeWaveletTransform< PeakType >::TransSpectrum::MZEnd(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::TransSpectrum().
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Referenced by IsotopeWaveletTransform< PeakType >::TransSpectrum::destroy(), IsotopeWaveletTransform< PeakType >::TransSpectrum::getTransIntensity(), IsotopeWaveletTransform< PeakType >::TransSpectrum::size(), IsotopeWaveletTransform< PeakType >::TransSpectrum::TransSpectrum(), and IsotopeWaveletTransform< PeakType >::TransSpectrum::~TransSpectrum().
OpenMS / TOPP release 1.11.1 | Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5 |