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RawMSSignalSimulation Member List

This is the complete list of members for RawMSSignalSimulation, including all inherited members.

add1DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct)RawMSSignalSimulationprotected
add2DSignal_(Feature &feature, MSSimExperiment &experiment, MSSimExperiment &experiment_ct)RawMSSignalSimulationprotected
addBaseLine_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit)RawMSSignalSimulationprotected
addDetectorNoise_(MSSimExperiment &experiment)RawMSSignalSimulationprotected
addShotNoise_(MSSimExperiment &experiment, SimCoordinateType minimal_mz_measurement_limit, SimCoordinateType maximal_mz_measurement_limit)RawMSSignalSimulationprotected
addWhiteNoise_(MSSimExperiment &experiment)RawMSSignalSimulationprotected
begin_ProgressLoggermutableprotected
check_defaults_DefaultParamHandlerprotected
chooseElutionProfile_(EGHModel *const elutionmodel, Feature &feature, const double scale, const DoubleReal rt_sampling_rate, const MSSimExperiment &experiment)RawMSSignalSimulationprotected
CMD enum valueProgressLogger
compressSignals_(MSSimExperiment &experiment)RawMSSignalSimulationprotected
contaminants_RawMSSignalSimulationprotected
contaminants_loaded_RawMSSignalSimulationprotected
createContaminants_(FeatureMapSim &contaminants, MSSimExperiment &exp, MSSimExperiment &exp_ct)RawMSSignalSimulationprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
dlg_ProgressLoggermutableprotected
end_ProgressLoggermutableprotected
endProgress() const ProgressLogger
error_name_DefaultParamHandlerprotected
generateRawSignals(FeatureMapSim &features, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, FeatureMapSim &contaminants)RawMSSignalSimulation
getDefaults() const DefaultParamHandler
getFeatureScaledIntensity_(const SimIntensityType feature_intensity, const SimIntensityType natural_scaling_factor)RawMSSignalSimulationprotected
getLogType() const ProgressLogger
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getPeakWidth_(const DoubleReal mz, const bool is_gaussian) const RawMSSignalSimulationprotected
getResolution_(const DoubleReal query_mz, const DoubleReal resolution, const RESOLUTIONMODEL model) const RawMSSignalSimulationprotected
getSamplingGrid_(std::vector< SimCoordinateType > &grid, const SimCoordinateType mz_min, const SimCoordinateType mz_max, const Int step_Da)RawMSSignalSimulationprotected
getSubsections() const DefaultParamHandler
grid_RawMSSignalSimulationprotected
GUI enum valueProgressLogger
IM_ALL enum valueRawMSSignalSimulationprotected
IM_ESI enum valueRawMSSignalSimulationprotected
IM_MALDI enum valueRawMSSignalSimulationprotected
intensity_scale_RawMSSignalSimulationprotected
intensity_scale_stddev_RawMSSignalSimulationprotected
IONIZATIONMETHOD enum nameRawMSSignalSimulationprotected
last_invoke_ProgressLoggermutableprotected
loadContaminants()RawMSSignalSimulation
LogType enum nameProgressLogger
mz_error_mean_RawMSSignalSimulationprotected
mz_error_stddev_RawMSSignalSimulationprotected
NONE enum valueProgressLogger
operator=(const RawMSSignalSimulation &source)RawMSSignalSimulation
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
PROFILESHAPE enum nameRawMSSignalSimulationprotected
ProgressLogger()ProgressLogger
RawMSSignalSimulation(const SimRandomNumberGenerator &rng)RawMSSignalSimulation
RawMSSignalSimulation(const RawMSSignalSimulation &source)RawMSSignalSimulation
RawMSSignalSimulation()RawMSSignalSimulationprotected
recursion_depth_ProgressLoggerprotectedstatic
res_base_RawMSSignalSimulationprotected
RES_CONSTANT enum valueRawMSSignalSimulationprotected
RES_LINEAR enum valueRawMSSignalSimulationprotected
res_model_RawMSSignalSimulationprotected
RES_SQRT enum valueRawMSSignalSimulationprotected
RESOLUTIONMODEL enum nameRawMSSignalSimulationprotected
rnd_gen_RawMSSignalSimulationprotected
RT_GAUSSIAN enum valueRawMSSignalSimulationprotected
RT_RECTANGULAR enum valueRawMSSignalSimulationprotected
samplePeptideModel1D_(const IsotopeModel &iso, const SimCoordinateType mz_start, const SimCoordinateType mz_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature)RawMSSignalSimulationprotected
samplePeptideModel2D_(const ProductModel< 2 > &pm, const SimCoordinateType mz_start, const SimCoordinateType mz_end, SimCoordinateType rt_start, SimCoordinateType rt_end, MSSimExperiment &experiment, MSSimExperiment &experiment_ct, Feature &activeFeature)RawMSSignalSimulationprotected
sampling_points_per_FWHM_RawMSSignalSimulationprotected
setDefaultParams_()RawMSSignalSimulationprotected
setLogType(LogType type) const ProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
stop_watch_ProgressLoggermutableprotected
subsections_DefaultParamHandlerprotected
THREADED_RANDOM_NUMBER_POOL_SIZE_RawMSSignalSimulationprotectedstatic
threaded_random_numbers_RawMSSignalSimulationprotected
threaded_random_numbers_index_RawMSSignalSimulationprotected
type_ProgressLoggermutableprotected
updateMembers_()RawMSSignalSimulationprotectedvirtual
value_ProgressLoggermutableprotected
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLogger
~RawMSSignalSimulation()RawMSSignalSimulationvirtual

OpenMS / TOPP release 1.11.1 Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5