SHOGUN  6.0.0
CIntronList Member List

This is the complete list of members for CIntronList, including all inherited members.

build_gradient_parameter_dictionary(CMap< TParameter *, CSGObject *> *dict)CSGObject
CIntronList()CIntronList
clone()CSGObjectvirtual
clone_parameters(CSGObject *other)CSGObjectprotected
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
deep_copy() constCSGObjectvirtual
equals(CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)CSGObjectvirtual
get(const Tag< T > &_tag) constCSGObject
get(const std::string &name) constCSGObject
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_intron_support(int32_t *values, int32_t from_pos, int32_t to_pos)CIntronList
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() constCIntronListvirtual
has(const std::string &name) constCSGObject
has(const Tag< T > &tag) constCSGObject
has(const std::string &name) constCSGObject
init_list(int32_t *all_pos, int32_t len)CIntronList
ioCSGObject
is_generic(EPrimitiveType *generic) constCSGObjectvirtual
load_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
load_serializable_post()CSGObjectprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_all_posCIntronListprotected
m_gradient_parametersCSGObject
m_hashCSGObject
m_intron_listCIntronListprotected
m_lengthCIntronListprotected
m_model_selection_parametersCSGObject
m_parametersCSGObject
m_quality_listCIntronListprotected
parallelCSGObject
parameter_hash_changed()CSGObjectvirtual
print_modsel_params()CSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
read_introns(int32_t *start_pos, int32_t *end_pos, int32_t *quality, int32_t len)CIntronList
register_param(Tag< T > &_tag, const T &value)CSGObjectprotected
register_param(const std::string &name, const T &value)CSGObjectprotected
save_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
save_serializable_post()CSGObjectprotectedvirtual
save_serializable_pre()CSGObjectprotectedvirtual
set(const Tag< T > &_tag, const T &value)CSGObject
set(const std::string &name, const T &value)CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
shallow_copy() constCSGObjectvirtual
unset_generic()CSGObject
update_parameter_hash()CSGObjectvirtual
versionCSGObject
~CIntronList()CIntronListvirtual
~CSGObject()CSGObjectvirtual

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