ReactionNetworks : Index
- clusterModelCellDeath -- an example of a chemical reaction
- clusterModelCellDeath() -- an example of a chemical reaction
- Complexes -- a mutable hash table, stores information about a reaction network
- ConcentrationRates -- a mutable hash table, stores information about a reaction network
- conservationEquations -- creates the conservation equations of a reaction network
- conservationEquations(ReactionNetwork) -- creates the conservation equations of a reaction network
- conservationEquations(ReactionNetwork,Ring) -- creates the conservation equations of a reaction network
- createConcentrationRates -- used in creating reaction network ring
- createInitialValues -- used in creating reaction network ring
- createReactionRates -- used in creating reaction network ring
- createRing -- creates a ring with generators species concentrations, reaction rates, initial values
- createRing(ReactionNetwork) -- creates a ring with generators species concentrations, reaction rates, initial values
- createRing(ReactionNetwork,Ring) -- creates a ring with generators species concentrations, reaction rates, initial values
- crossLinkingModelCelldeath (missing documentation)
- displayComplexes (missing documentation)
- FullEdges (missing documentation)
- glue -- combine two networks
- glue(List,ReactionNetwork) -- combine two networks
- glue(ReactionNetwork,List) -- combine two networks
- glue(ReactionNetwork,ReactionNetwork) -- combine two networks
- InitialValues -- a mutable hash table, stores information about a reaction network
- isDeficient -- determines deficiency of a network
- isWeaklyReversible -- determines if a network is weakly reversible
- modificationOfTwoSubstratesH -- an example chemical reaction motif
- modificationOfTwoSubstratesH() -- an example chemical reaction motif
- modificationOfTwoSubstratesI -- an example chemical reaction motif
- modificationOfTwoSubstratesI() -- an example chemical reaction motif
- negativeLaplacian (missing documentation)
- NullEdges (missing documentation)
- NullIndex -- a mutable hash table, stores information about a reaction network
- NullSymbol -- a mutable hash table, stores information about a reaction network
- oneSiteModificationA -- an example for chemical reaction motif
- oneSiteModificationA() -- an example for chemical reaction motif
- oneSiteModificationB -- an example for chemical reaction motif
- oneSiteModificationB() -- an example for chemical reaction motif
- oneSiteModificationC -- an example for chemical reaction motif
- oneSiteModificationC() -- an example for chemical reaction motif
- oneSiteModificationD -- an example for chemical reaction motif
- oneSiteModificationD() -- an example for chemical reaction motif
- reactantMatrix (missing documentation)
- ReactionGraph -- a mutable hash table, stores information about a reaction network
- reactionMatrix (missing documentation)
- ReactionNetwork -- a mutable hash table, stores information about a reaction network
- reactionNetwork -- creates a reaction network
- reactionNetwork(List) -- creates a reaction network
- reactionNetwork(String) -- creates a reaction network
- ReactionNetworks -- create chemical reaction networks and corresponding steady-state and conservation equations
- ReactionRates -- a mutable hash table, stores information about a reaction network
- ReactionRing -- a mutable hash table, stores information about a reaction network
- Species -- a mutable hash table, stores information about a reaction network
- steadyStateEquations -- creates steady-state equations of a reaction network
- steadyStateEquations(ReactionNetwork) -- creates steady-state equations of a reaction network
- steadyStateEquations(ReactionNetwork,Ring) -- creates steady-state equations of a reaction network
- stoichiometricMatrix (missing documentation)
- stoichiometricSubspace (missing documentation)
- stoichSubspaceKer (missing documentation)
- subRandomInitVals (missing documentation)
- subRandomReactionRates (missing documentation)
- substitute(ReactionNetwork,List) -- substitute species names in reaction network
- twoLayerCascadeJ -- an example chemical reaction motif
- twoLayerCascadeJ() -- an example chemical reaction motif
- twoLayerCascadeK -- an example chemical reaction motif
- twoLayerCascadeK() -- an example chemical reaction motif
- twoLayerCascadeL -- an example for chemical reaction motif
- twoLayerCascadeL() -- an example for chemical reaction motif
- twoSiteModificationE -- an example for chemical rection motif
- twoSiteModificationE() -- an example for chemical rection motif
- twoSiteModificationF -- an example for chemical reaction motif
- twoSiteModificationF() -- an example for chemical reaction motif
- twoSiteModificationG -- an example chemical reaction motif
- twoSiteModificationG() -- an example chemical reaction motif
- wnt -- shuttle model for Wnt signaling pathway
- wnt() -- shuttle model for Wnt signaling pathway