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Hierarchy For All Packages
Package Hierarchies:
org.jmol.adapter.readers.cifpdb
,
org.jmol.adapter.readers.molxyz
,
org.jmol.adapter.readers.more
,
org.jmol.adapter.readers.xml
,
org.jmol.adapter.smarter
,
org.jmol.api
,
org.jmol.applet
,
org.jmol.appletwrapper
,
org.jmol.atomdata
,
org.jmol.bspt
,
org.jmol.console
,
org.jmol.export
,
org.jmol.export.dialog
,
org.jmol.export.history
,
org.jmol.export.image
,
org.jmol.g3d
,
org.jmol.geodesic
,
org.jmol.i18n
,
org.jmol.jcamp
,
org.jmol.jcamp.data
,
org.jmol.jcamp.utils
,
org.jmol.jvxl.api
,
org.jmol.jvxl.calc
,
org.jmol.jvxl.data
,
org.jmol.jvxl.readers
,
org.jmol.minimize
,
org.jmol.minimize.forcefield
,
org.jmol.modelset
,
org.jmol.modelsetbio
,
org.jmol.popup
,
org.jmol.quantum
,
org.jmol.shape
,
org.jmol.shapebio
,
org.jmol.shapespecial
,
org.jmol.shapesurface
,
org.jmol.smiles
,
org.jmol.symmetry
,
org.jmol.util
,
org.jmol.viewer
,
org.openscience.jmol.app
,
org.openscience.jmol.app.jmolpanel
,
org.openscience.jmol.app.webexport
,
org.openscience.jvxl
,
org.openscience.jvxl.simplewriter
Class Hierarchy
java.lang.Object
org.jmol.export.
_Exporter
org.jmol.export.
_IdtfExporter
org.jmol.export.
_MayaExporter
org.jmol.export.
_PovrayExporter
org.jmol.export.
_VrmlExporter
org.jmol.export.
_X3dExporter
org.openscience.jmol.app.jmolpanel.
AboutDialog.PageLoader
(implements java.lang.Runnable)
javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
DisplayPanel.CheckBoxMenuItemAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.DefineCenterAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.HomeAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.MoveToAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.SetStatusAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AboutAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AtomSetChooserAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CloseAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ConsoleAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyImageAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExecuteScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExitAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExportAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.GaussianAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenUrlAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewwinAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PasteClipboardAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PovrayAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PrintAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.RecentFilesAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptEditorAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptWindowAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ToWebAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.UguideAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ViewMeasurementTableAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WhatsNewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WriteAction
org.openscience.jmol.app.jmolpanel.
PreferencesDialog.PrefsAction
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractList<E> (implements java.util.List<E>)
java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
org.jmol.export.image.
GifEncoder.ColorVector
javax.swing.text.AbstractDocument (implements javax.swing.text.Document, java.io.Serializable)
javax.swing.text.DefaultStyledDocument (implements javax.swing.text.StyledDocument)
org.openscience.jmol.app.jmolpanel.
AppConsole.ConsoleDocument
org.jmol.console.
ScriptEditor.EditorDocument
javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementTableModel
org.jmol.viewer.
AnimationManager
org.openscience.jmol.app.webexport.
ArrayListTransferHandler.ArrayListTransferable
(implements java.awt.datatransfer.Transferable)
org.jmol.util.
ArrayUtil
org.openscience.jvxl.simplewriter.
ASimpleJvxlWriter
org.jmol.modelset.
AtomCollection
org.jmol.modelset.
BondCollection
org.jmol.modelset.
ModelCollection
org.jmol.modelset.
ModelSet
org.jmol.modelset.
ModelLoader
org.jmol.atomdata.
AtomData
org.jmol.modelset.
AtomIteratorWithinModel
(implements org.jmol.modelset.
AtomIndexIterator
)
org.jmol.modelset.
AtomIteratorWithinSet
(implements org.jmol.modelset.
AtomIndexIterator
)
org.jmol.adapter.smarter.
AtomSetCollection
org.jmol.adapter.smarter.
AtomSetCollectionReader
org.jmol.adapter.readers.more.
AdfReader
org.jmol.adapter.readers.more.
AimsReader
org.jmol.adapter.readers.more.
AlchemyReader
org.jmol.adapter.readers.more.
CastepReader
org.jmol.adapter.readers.cifpdb.
CifReader
(implements org.jmol.api.
JmolLineReader
)
org.jmol.adapter.readers.more.
CubeReader
org.jmol.adapter.readers.more.
FFReader
org.jmol.adapter.readers.more.
MdTopReader
org.jmol.adapter.readers.more.
Mol2Reader
org.jmol.adapter.readers.more.
FoldingXyzReader
org.jmol.adapter.readers.more.
GaussianWfnReader
org.jmol.adapter.readers.more.
GhemicalMMReader
org.jmol.adapter.readers.more.
GromacsReader
org.jmol.adapter.readers.more.
HinReader
org.jmol.adapter.readers.more.
JmeReader
org.jmol.adapter.readers.more.
MdCrdReader
org.jmol.adapter.readers.molxyz.
MolReader
org.jmol.adapter.readers.more.
MopacDataReader
org.jmol.adapter.readers.more.
CsfReader
org.jmol.adapter.readers.more.
MoldenReader
org.jmol.adapter.readers.more.
MopacGraphfReader
org.jmol.adapter.readers.more.
WebMOReader
org.jmol.adapter.readers.more.
MopacReader
org.jmol.adapter.readers.more.
MOReader
org.jmol.adapter.readers.more.
GamessReader
org.jmol.adapter.readers.more.
GamessUKReader
org.jmol.adapter.readers.more.
GamessUSReader
org.jmol.adapter.readers.more.
GaussianReader
org.jmol.adapter.readers.more.
JaguarReader
org.jmol.adapter.readers.more.
NWChemReader
org.jmol.adapter.readers.more.
PsiReader
org.jmol.adapter.readers.more.
QchemReader
org.jmol.adapter.readers.more.
OdysseyXMLReader
org.jmol.adapter.readers.cifpdb.
PdbReader
org.jmol.adapter.readers.more.
PqrReader
org.jmol.adapter.readers.more.
ShelxReader
org.jmol.adapter.readers.more.
SpartanInputReader
org.jmol.adapter.readers.more.
OdysseyReader
org.jmol.adapter.readers.more.
SpartanSmolReader
org.jmol.adapter.readers.more.
SpartanReader
org.jmol.adapter.readers.more.
V3000Reader
org.jmol.adapter.readers.more.
Wien2kReader
org.jmol.adapter.readers.xml.
XmlReader
org.jmol.adapter.readers.xml.
XmlArgusReader
org.jmol.adapter.readers.xml.
XmlChem3dReader
org.jmol.adapter.readers.xml.
XmlCmlReader
org.jmol.adapter.readers.xml.
XmlMolproReader
org.jmol.adapter.readers.xml.
XmlOdysseyReader
org.jmol.adapter.readers.xml.
XmlXsdReader
org.jmol.adapter.readers.molxyz.
XyzReader
org.jmol.export.image.
AviCreator
(implements org.jmol.api.
JmolMovieCreatorInterface
)
org.jmol.util.
Base64
org.jmol.util.
BinaryDocument
org.jmol.util.
CompoundDocument
org.jmol.shapebio.
BioShape
java.util.BitSet (implements java.lang.Cloneable, java.io.Serializable)
org.jmol.modelset.
Bond.BondSet
org.jmol.util.
BitSetUtil
org.jmol.adapter.smarter.
Bond
org.jmol.modelset.
Bond
org.jmol.modelset.
HBond
org.jmol.modelset.
BondIteratorSelected
(implements org.jmol.modelset.
BondIterator
)
org.jmol.modelset.
BoxInfo
org.jmol.bspt.
Bspf
org.jmol.bspt.
Bspt
org.jmol.minimize.forcefield.
Calculation
org.jmol.minimize.forcefield.
CalculationsUFF.AngleCalc
org.jmol.minimize.forcefield.
CalculationsUFF.DistanceCalc
org.jmol.minimize.forcefield.
CalculationsUFF.OOPCalc
org.jmol.minimize.forcefield.
CalculationsUFF.PairCalc
org.jmol.minimize.forcefield.
CalculationsUFF.ESCalc
org.jmol.minimize.forcefield.
CalculationsUFF.VDWCalc
org.jmol.minimize.forcefield.
CalculationsUFF.TorsionCalc
org.jmol.minimize.forcefield.
Calculations
org.jmol.minimize.forcefield.
CalculationsUFF
org.jmol.modelset.
Chain
org.jmol.util.
CifDataReader
org.jmol.g3d.
Circle3D
org.jmol.g3d.
Colix3D
org.jmol.util.
ColorEncoder
org.jmol.viewer.
ColorManager
org.jmol.util.
CommandHistory
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Canvas (implements javax.accessibility.Accessible)
org.jmol.jcamp.
ZoneVisu
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.jmol.console.
AppletConsole.KeyJMenuItem
(implements org.jmol.console.
AppletConsole.GetKey
)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JCheckBoxMenuItem (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJCheckBoxMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.jmol.console.
AppletConsole.KeyJMenu
(implements org.jmol.console.
AppletConsole.GetKey
)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJMenu
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JRadioButtonMenuItem (implements javax.accessibility.Accessible)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJRadioButtonMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JToggleButton (implements javax.accessibility.Accessible)
javax.swing.JCheckBox (implements javax.accessibility.Accessible)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJCheckBox
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JFileChooser (implements javax.accessibility.Accessible)
org.jmol.export.dialog.
FileChooser
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.openscience.jmol.app.webexport.
WebPanel.InstanceCellRenderer
(implements javax.swing.ListCellRenderer)
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.jmol.export.dialog.
Dialog
(implements org.jmol.api.
JmolDialogInterface
)
org.openscience.jmol.app.jmolpanel.
DisplayPanel
(implements java.awt.event.ComponentListener, java.awt.print.Printable)
org.jmol.export.dialog.
FilePreview
(implements java.beans.PropertyChangeListener)
org.jmol.export.dialog.
FilePreview.FPPanel
org.openscience.jmol.app.jmolpanel.
FileTyper
(implements java.awt.event.ItemListener, java.beans.PropertyChangeListener)
org.openscience.jmol.app.jmolpanel.
JmolPanel
(implements org.openscience.jmol.app.
SplashInterface
)
org.openscience.jmol.app.
Jmol
org.openscience.jmol.app.webexport.
Molecules
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
Orbitals
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
StatusBar
org.openscience.jmol.app.webexport.
Test
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
WebExport
(implements java.awt.event.WindowListener)
org.openscience.jmol.app.webexport.
WebMaker
org.openscience.jmol.app.webexport.
WebPanel
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
PopInJmol
org.openscience.jmol.app.webexport.
ScriptButtons
javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
javax.swing.JEditorPane
javax.swing.JTextPane
org.openscience.jmol.app.jmolpanel.
AppConsole.ConsoleTextPane
org.jmol.console.
ScriptEditor.EditorTextPane
javax.swing.JTextArea
org.jmol.console.
AppletConsole.ControlEnterTextArea
org.openscience.jmol.app.jmolpanel.
ConsoleTextArea
java.awt.Panel (implements javax.accessibility.Accessible)
java.applet.Applet
org.jmol.appletwrapper.
AppletWrapper
org.jmol.jcamp.
Visua
(implements java.lang.Runnable)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AboutDialog
(implements javax.swing.event.HyperlinkListener)
org.openscience.jmol.app.jmolpanel.
GaussianDialog
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener)
org.openscience.jmol.app.jmolpanel.
HelpDialog
(implements javax.swing.event.HyperlinkListener)
org.jmol.console.
JmolConsole
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.openscience.jmol.app.jmolpanel.
AppConsole
(implements org.openscience.jmol.app.jmolpanel.
EnterListener
, org.jmol.api.
JmolAppConsoleInterface
)
org.jmol.console.
AppletConsole
(implements org.jmol.api.
JmolAppConsoleInterface
)
org.openscience.jmol.app.jmolpanel.
MeasurementTable
org.openscience.jmol.app.jmolpanel.
PovrayDialog
org.openscience.jmol.app.jmolpanel.
PreferencesDialog
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
RecentFilesDialog
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.jmol.console.
ScriptEditor
(implements java.awt.event.ActionListener, org.jmol.api.
JmolScriptEditorInterface
)
org.openscience.jmol.app.jmolpanel.
WhatsNewDialog
(implements javax.swing.event.HyperlinkListener)
org.jmol.jcamp.
SaisieDlg
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.beans.PropertyChangeListener, java.lang.Runnable, javax.swing.event.TreeSelectionListener)
org.jmol.util.
JpegEncoder
org.openscience.jmol.app.jmolpanel.
Splash
(implements org.openscience.jmol.app.
SplashInterface
)
org.jmol.util.
CompoundDocument.CmpDocDirectoryEntry
org.jmol.util.
CompoundDocument.CmpDocHeader
org.jmol.bspt.
CubeIterator
org.jmol.g3d.
Cylinder3D
org.jmol.viewer.
DataManager
org.jmol.util.
DCT
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
org.jmol.adapter.readers.xml.
XmlReader.JmolXmlHandler
(implements org.xml.sax.ErrorHandler)
org.jmol.adapter.readers.xml.
XmlArgusReader.ArgusHandler
org.jmol.adapter.readers.xml.
XmlChem3dReader.Chem3dHandler
org.jmol.adapter.readers.xml.
XmlCmlReader.CmlHandler
org.jmol.adapter.readers.xml.
XmlMolproReader.MolproHandler
org.jmol.adapter.readers.xml.
XmlOdysseyReader.OdysseyHandler
org.jmol.adapter.readers.xml.
XmlXsdReader.XsdHandler
org.jmol.util.
DefaultLogger
(implements org.jmol.util.
LoggerInterface
)
javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser.AtomSet
org.jmol.export.dialog.
Dialog.ExportChoiceListener
(implements java.awt.event.ItemListener)
org.jmol.export.dialog.
Dialog.QualityListener
(implements javax.swing.event.ChangeListener)
org.jmol.shapespecial.
Dipole
org.jmol.util.
Eigen
org.jmol.bspt.
Element
org.jmol.bspt.
Leaf
org.jmol.bspt.
Node
org.jmol.shapespecial.
Ellipsoids.Ellipsoid
org.jmol.geodesic.
EnvelopeCalculation
org.jmol.util.
Escape
org.jmol.export.
Export3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.minimize.forcefield.
FFParam
org.openscience.jmol.app.jmolpanel.
FileDropper
(implements java.awt.dnd.DropTargetListener)
javax.swing.filechooser.FileFilter
org.jmol.export.dialog.
Dialog.TypeFilter
org.jmol.viewer.
FileManager
org.jmol.viewer.
FileManager.DOMReaderThread
(implements java.lang.Runnable)
org.jmol.viewer.
FileManager.FileReaderThread
(implements java.lang.Runnable)
org.jmol.viewer.
FileManager.FilesReaderThread
(implements org.jmol.api.
JmolFileReaderInterface
, java.lang.Runnable)
org.openscience.jvxl.
FileReader
org.jmol.g3d.
Font3D
org.jmol.minimize.forcefield.
ForceField
org.jmol.minimize.forcefield.
ForceFieldUFF
org.jmol.geodesic.
Geodesic
org.jmol.export.image.
GifEncoder.AdaptiveColorCollection
org.jmol.export.image.
GifEncoder.ColorItem
org.jmol.export.image.
GifEncoder.ColorVector.CountComparator
(implements java.util.Comparator<T>)
org.jmol.jcamp.
GraphCharacteristics
org.jmol.jcamp.data.
GraphControlData
org.jmol.g3d.
Graphics3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.g3d.
Graphics3D.Pixel
org.jmol.g3d.
Graphics3D.ShadePixel
org.jmol.modelset.
Group
org.jmol.modelsetbio.
Monomer
org.jmol.modelsetbio.
AlphaMonomer
org.jmol.modelsetbio.
AminoMonomer
org.jmol.modelsetbio.
CarbohydrateMonomer
org.jmol.modelsetbio.
PhosphorusMonomer
org.jmol.modelsetbio.
NucleicMonomer
org.jmol.i18n.
GT
org.jmol.i18n.
GT.Language
org.openscience.jmol.app.jmolpanel.
GuiMap
org.jmol.symmetry.
HallInfo
org.jmol.symmetry.
HallInfo.RotationTerm
org.openscience.jmol.app.jmolpanel.
HelpDialog.PageLoader
(implements java.lang.Runnable)
org.jmol.g3d.
Hermite3D
org.jmol.export.history.
HistoryFile
org.jmol.util.
Huffman
org.jmol.export.image.
ImageCreator
(implements org.jmol.api.
JmolImageCreatorInterface
)
org.jmol.export.image.
ImageEncoder
(implements java.awt.image.ImageConsumer)
org.jmol.export.image.
GifEncoder
org.jmol.export.image.
PpmEncoder
org.jmol.export.image.
ImageSelection
(implements java.awt.datatransfer.Transferable)
java.io.InputStream (implements java.io.Closeable)
java.io.FilterInputStream
org.jmol.viewer.
MonitorInputStream
org.openscience.jvxl.
MonitorInputStream
org.jmol.util.
Int2IntHash
org.jmol.util.
Int2IntHash.Entry
org.jmol.api.
Interface
org.jmol.applet.
Jmol
(implements org.jmol.appletwrapper.
WrappedApplet
)
org.jmol.applet.
Jmol.MyStatusListener
(implements org.jmol.api.
JmolStatusListener
)
org.jmol.api.
JmolAdapter
org.jmol.adapter.smarter.
SmarterJmolAdapter
org.jmol.api.
JmolAdapter.AtomIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.AtomIterator
org.jmol.api.
JmolAdapter.BondIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.BondIterator
org.jmol.api.
JmolAdapter.StructureIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.StructureIterator
org.openscience.jmol.app.
JmolApp
org.jmol.applet.
JmolAppletRegistry
org.jmol.viewer.
JmolConstants
org.openscience.jmol.app.
JmolData
org.openscience.jmol.app.webexport.
JmolInstance
org.openscience.jmol.app.jmolpanel.
JmolPanel.ActionChangedListener
(implements java.beans.PropertyChangeListener)
org.openscience.jmol.app.jmolpanel.
JmolPanel.MyStatusListener
(implements org.jmol.api.
JmolStatusListener
)
org.jmol.popup.
JmolPopup
org.jmol.popup.
JmolPopupAwt
org.jmol.popup.
JmolPopupSwing
org.jmol.popup.
JmolPopup.CheckboxMenuItemListener
(implements java.awt.event.ItemListener)
org.jmol.popup.
JmolPopup.MenuItemListener
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
JmolResourceHandler
org.jmol.api.
JmolSimpleViewer
org.jmol.api.
JmolViewer
org.jmol.viewer.
Viewer
(implements org.jmol.atomdata.
AtomDataServer
)
org.jmol.util.
JpegInfo
org.jmol.applet.
Jvm12
org.openscience.jvxl.
Jvxl
org.jmol.jvxl.data.
JvxlData
org.openscience.jvxl.simplewriter.
JvxlData
org.openscience.jvxl.simplewriter.
JvxlWrite
org.jmol.modelset.
LabelToken
org.jmol.adapter.smarter.
LimitedLineReader
org.jmol.jvxl.readers.
LimitedLineReader
org.jmol.g3d.
Line3D
org.jmol.util.
Logger
org.openscience.jmol.app.webexport.
LogPanel
org.openscience.jmol.app.jmolpanel.
LoopedStreams
org.jmol.jvxl.calc.
MarchingSquares
org.jmol.jvxl.calc.
MarchingSquares.ContourVertex
org.jmol.jvxl.calc.
MarchingSquares.PlanarSquare
javax.vecmath.Matrix4f (implements java.lang.Cloneable, java.io.Serializable)
org.jmol.symmetry.
SymmetryOperation
org.jmol.util.
Measure
org.jmol.modelset.
Measurement
org.jmol.modelset.
MeasurementPending
org.jmol.shape.
Mesh
org.jmol.shapespecial.
DrawMesh
org.jmol.shapesurface.
IsosurfaceMesh
org.jmol.jvxl.data.
MeshData
org.jmol.minimize.
MinAtom
org.jmol.minimize.
MinBond
org.jmol.minimize.
Minimizer
(implements org.jmol.api.
MinimizerInterface
)
org.jmol.modelset.
Model
org.jmol.modelset.
ModelCollection.StateScript
org.jmol.modelset.
ModelCollection.Structure
org.jmol.viewer.
ModelManager
org.jmol.modelset.
Molecule
org.jmol.adapter.readers.more.
MopacData
org.jmol.viewer.
MouseManager
(implements java.awt.event.KeyListener)
org.jmol.viewer.
MouseManager10
org.jmol.viewer.
MouseManager11
(implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
org.jmol.viewer.
MouseManager14
(implements java.awt.event.MouseWheelListener)
org.jmol.viewer.
MouseManager.HoverWatcher
(implements java.lang.Runnable)
org.jmol.viewer.
MouseWrapper11
org.jmol.viewer.
MouseWrapper14
org.jmol.g3d.
Normix3D
org.jmol.jcamp.utils.
NumericDataUtils
org.jmol.shape.
Object2d
org.jmol.shape.
Text
org.jmol.jvxl.readers.
Parameters
org.jmol.util.
Parser
org.jmol.smiles.
PatternMatcher
(implements org.jmol.api.
SmilesMatcherInterface
)
org.openscience.jmol.app.jmolpanel.
PdfCreator
(implements org.jmol.api.
JmolPdfCreatorInterface
)
org.jmol.viewer.
PickingManager
org.jmol.g3d.
Platform3D
org.jmol.g3d.
Awt3D
(implements java.awt.image.ImageProducer)
org.jmol.g3d.
Swing3D
org.jmol.export.image.
PngEncoder
org.jmol.symmetry.
PointGroup
org.jmol.symmetry.
PointGroup.Operation
org.jmol.shapespecial.
Polyhedra.Polyhedron
org.jmol.modelset.
Polymer
org.jmol.modelsetbio.
BioPolymer
org.jmol.modelsetbio.
AlphaPolymer
org.jmol.modelsetbio.
AminoPolymer
org.jmol.modelsetbio.
CarbohydratePolymer
org.jmol.modelsetbio.
NucleicPolymer
org.jmol.modelsetbio.
PhosphorusPolymer
org.jmol.popup.
PopupResourceBundle
org.openscience.jmol.app.jmolpanel.
PovraySaver
org.jmol.viewer.
PropertyManager
org.jmol.modelsetbio.
ProteinStructure
org.jmol.modelsetbio.
Helix
org.jmol.modelsetbio.
Sheet
org.jmol.modelsetbio.
Turn
org.jmol.adapter.readers.more.
QchemReader.MOInfo
org.jmol.util.
Quadric
org.jmol.quantum.
QuantumCalculation
org.jmol.quantum.
MepCalculation
(implements org.jmol.api.
MepCalculationInterface
)
org.jmol.quantum.
MOCalculation
(implements org.jmol.api.
MOCalculationInterface
)
org.jmol.util.
Quaternion
org.jmol.viewer.
RepaintManager
org.jmol.adapter.smarter.
Resolver
org.jmol.modelsetbio.
Resolver
(implements org.jmol.api.
JmolBioResolver
)
org.jmol.g3d.
Rgb16
org.jmol.symmetry.
Rotation
org.jmol.viewer.
ScriptCompilationTokenParser
org.jmol.viewer.
ScriptCompiler
org.jmol.viewer.
ScriptContext
org.jmol.console.
ScriptEditor.EditorDocument.MyUndoableEditListener
(implements javax.swing.event.UndoableEditListener)
org.jmol.viewer.
ScriptEvaluator
org.jmol.viewer.
ScriptFlowContext
org.jmol.viewer.
ScriptFunction
org.jmol.viewer.
ScriptManager
org.jmol.viewer.
ScriptManager.CommandWatcher
(implements java.lang.Runnable)
org.jmol.viewer.
ScriptManager.ScriptQueueRunnable
(implements java.lang.Runnable)
org.jmol.viewer.
ScriptMathProcessor
org.jmol.viewer.
SelectionManager
org.jmol.g3d.
Shade3D
org.jmol.shape.
Shape
org.jmol.shape.
AtomShape
org.jmol.shape.
Balls
org.jmol.shape.
Dots
org.jmol.shapespecial.
GeoSurface
org.jmol.shapespecial.
Ellipsoids
org.jmol.shape.
Halos
org.jmol.shape.
Labels
org.jmol.shapespecial.
Polyhedra
org.jmol.shape.
Stars
org.jmol.shapespecial.
Vectors
org.jmol.shapebio.
BioShapeCollection
org.jmol.shapebio.
Backbone
org.jmol.shapebio.
Ribbons
org.jmol.shapebio.
Rockets
org.jmol.shapebio.
Cartoon
org.jmol.shapebio.
Strands
org.jmol.shapebio.
MeshRibbon
org.jmol.shapebio.
Trace
org.jmol.shapespecial.
Dipoles
org.jmol.shape.
FontLineShape
org.jmol.shape.
Axes
org.jmol.shape.
Bbcage
org.jmol.shape.
Frank
org.jmol.shape.
Uccage
org.jmol.shape.
Measures
org.jmol.shape.
MeshCollection
org.jmol.shapespecial.
Draw
org.jmol.shapesurface.
Isosurface
(implements org.jmol.jvxl.api.
MeshDataServer
)
org.jmol.shapesurface.
LcaoCartoon
org.jmol.shapesurface.
MolecularOrbital
org.jmol.shapesurface.
Pmesh
org.jmol.shape.
Object2dShape
org.jmol.shape.
TextShape
org.jmol.shape.
Echo
org.jmol.shape.
Hover
org.jmol.shape.
Sticks
org.jmol.shape.
ShapeRenderer
org.jmol.shape.
BallsRenderer
org.jmol.export.
BallsGenerator
org.jmol.shapespecial.
DipolesRenderer
org.jmol.shape.
DotsRenderer
org.jmol.shapespecial.
GeoSurfaceRenderer
org.jmol.shape.
EchoRenderer
org.jmol.shapespecial.
EllipsoidsRenderer
org.jmol.shape.
FontLineShapeRenderer
org.jmol.shape.
AxesRenderer
org.jmol.shape.
BbcageRenderer
org.jmol.shape.
FrankRenderer
org.jmol.shape.
MeasuresRenderer
org.jmol.shape.
UccageRenderer
org.jmol.shape.
HalosRenderer
org.jmol.shape.
HoverRenderer
org.jmol.shape.
LabelsRenderer
org.jmol.export.
LabelsGenerator
org.jmol.shape.
MeshRenderer
org.jmol.shapebio.
BioShapeRenderer
org.jmol.shapebio.
BackboneRenderer
org.jmol.shapebio.
RocketsRenderer
org.jmol.shapebio.
CartoonRenderer
org.jmol.shapebio.
StrandsRenderer
org.jmol.shapebio.
MeshRibbonRenderer
org.jmol.shapebio.
RibbonsRenderer
org.jmol.shapebio.
TraceRenderer
org.jmol.shapespecial.
DrawRenderer
org.jmol.shapesurface.
IsosurfaceRenderer
org.jmol.export.
IsosurfaceGenerator
org.jmol.shapesurface.
LcaoCartoonRenderer
org.jmol.export.
LcaoCartoonGenerator
org.jmol.shapesurface.
MolecularOrbitalRenderer
org.jmol.export.
MolecularOrbitalGenerator
org.jmol.shapesurface.
PmeshRenderer
org.jmol.export.
PmeshGenerator
org.jmol.shapespecial.
PolyhedraRenderer
org.jmol.shape.
StarsRenderer
org.jmol.shape.
SticksRenderer
org.jmol.export.
SticksGenerator
org.jmol.shapespecial.
VectorsRenderer
org.openscience.jvxl.simplewriter.
SimpleMarchingCubes
org.openscience.jvxl.simplewriter.
SimpleMarchingCubesOld
org.jmol.smiles.
SmilesAtom
org.jmol.smiles.
SmilesBond
org.jmol.smiles.
SmilesMolecule
org.jmol.smiles.
SmilesParser
org.jmol.symmetry.
SpaceGroup
org.jmol.adapter.readers.more.
SpartanArchive
org.jmol.adapter.readers.more.
SpartanSmolReader.MoleculeRecord
org.jmol.g3d.
Sphere3D
org.jmol.viewer.
StateManager
org.jmol.viewer.
StateManager.Connection
org.jmol.viewer.
StateManager.Connections
org.jmol.viewer.
StateManager.GlobalSettings
org.jmol.viewer.
StateManager.Orientation
org.jmol.viewer.
StatusManager
org.jmol.jcamp.utils.
StringDataUtils
org.jmol.adapter.smarter.
Structure
org.jmol.jvxl.readers.
SurfaceGenerator
org.jmol.jvxl.readers.
SurfaceReader
(implements org.jmol.jvxl.api.
VertexDataServer
)
org.jmol.jvxl.readers.
SurfaceFileReader
org.jmol.jvxl.readers.
PolygonFileReader
org.jmol.jvxl.readers.
EfvetReader
org.jmol.jvxl.readers.
ObjReader
org.jmol.jvxl.readers.
PmeshReader
org.jmol.jvxl.readers.
VolumeFileReader
org.jmol.jvxl.readers.
ApbsReader
org.jmol.jvxl.readers.
CubeReader
org.jmol.jvxl.readers.
JaguarReader
org.jmol.jvxl.readers.
JvxlReader
org.jmol.jvxl.readers.
MapFileReader
org.jmol.jvxl.readers.
MrcBinaryReader
org.jmol.jvxl.readers.
XplorReader
org.jmol.jvxl.readers.
PltFormattedReader
org.jmol.jvxl.readers.
VolumeDataReader
org.jmol.jvxl.readers.
AtomDataReader
org.jmol.jvxl.readers.
IsoMepReader
org.jmol.jvxl.readers.
IsoMOReader
org.jmol.jvxl.readers.
IsoPlaneReader
org.jmol.jvxl.readers.
IsoSolventReader
org.jmol.jvxl.readers.
IsoFxyReader
org.jmol.jvxl.readers.
IsoFxyzReader
org.jmol.jvxl.readers.
IsoShapeReader
org.jmol.symmetry.
Symmetry
(implements org.jmol.api.
SymmetryInterface
)
org.jmol.symmetry.
SymmetryInfo
org.jmol.util.
TempArray
org.jmol.g3d.
Text3D
org.jmol.util.
TextFormat
java.lang.Thread (implements java.lang.Runnable)
org.jmol.viewer.
AnimationManager.AnimationThread
(implements java.lang.Runnable)
org.openscience.jmol.app.jmolpanel.
AppConsole.ExecuteCommandThread
org.jmol.appletwrapper.
ClassPreloader
org.jmol.minimize.
Minimizer.MinimizationThread
(implements java.lang.Runnable)
org.jmol.g3d.
Platform3D.ClearingThread
(implements java.lang.Runnable)
org.jmol.appletwrapper.
TickerThread
org.jmol.viewer.
TransformManager.SpinThread
(implements java.lang.Runnable)
org.jmol.viewer.
TransformManager.VibrationThread
(implements java.lang.Runnable)
org.jmol.appletwrapper.
WrappedAppletLoader
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
org.jmol.smiles.
InvalidSmilesException
org.jmol.viewer.
ScriptEvaluator.ScriptException
org.jmol.viewer.
Token
org.jmol.viewer.
ScriptVariable
javax.swing.TransferHandler (implements java.io.Serializable)
org.openscience.jmol.app.webexport.
ArrayListTransferHandler
org.jmol.viewer.
TransformManager
org.jmol.viewer.
TransformManager10
org.jmol.viewer.
TransformManager11
org.jmol.symmetry.
Translation
org.jmol.g3d.
Triangle3D
org.jmol.jvxl.calc.
TriangleData
(implements org.jmol.api.
TriangleServer
)
org.jmol.jvxl.calc.
MarchingCubes
javax.vecmath.Tuple3f (implements java.lang.Cloneable, java.io.Serializable)
javax.vecmath.Point3f (implements java.io.Serializable)
org.jmol.adapter.smarter.
Atom
(implements java.lang.Cloneable)
org.jmol.util.
Point3fi
org.jmol.modelset.
Atom
org.jmol.quantum.
QuantumCalculation.QMAtom
org.jmol.symmetry.
UnitCell
org.jmol.symmetry.
UnitCell.Data
org.jmol.minimize.
Util
org.jmol.jvxl.data.
VolumeData
(implements org.jmol.api.
VolumeDataInterface
)
org.openscience.jvxl.simplewriter.
VolumeData
org.openscience.jvxl.simplewriter.
VoxelDataCreator
org.openscience.jmol.app.jmolpanel.
WhatsNewDialog.PageLoader
(implements java.lang.Runnable)
java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
org.openscience.jmol.app.jmolpanel.
JmolPanel.AppCloser
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementListWindowListener
org.openscience.jmol.app.jmolpanel.
PovrayDialog.PovrayWindowListener
org.openscience.jmol.app.jmolpanel.
Splash.WindowListener
org.jmol.adapter.readers.xml.
XmlReader.DummyResolver
(implements org.xml.sax.EntityResolver)
org.jmol.util.
ZipUtil
Interface Hierarchy
org.jmol.console.
AppletConsole.GetKey
org.jmol.atomdata.
AtomDataServer
org.jmol.modelset.
AtomIndexIterator
org.jmol.modelset.
BondIterator
org.openscience.jmol.app.jmolpanel.
EnterListener
org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
org.jmol.api.
JmolAppConsoleInterface
org.jmol.api.
JmolAppletInterface
org.jmol.appletwrapper.
WrappedApplet
org.jmol.api.
JmolBioResolver
org.jmol.api.
JmolCallbackListener
org.jmol.api.
JmolStatusListener
org.jmol.api.
JmolDialogInterface
org.jmol.api.
JmolFileReaderInterface
org.jmol.api.
JmolImageCreatorInterface
org.jmol.api.
JmolLineReader
org.jmol.api.
JmolMovieCreatorInterface
org.jmol.api.
JmolPdfCreatorInterface
org.jmol.api.
JmolRendererInterface
org.jmol.api.
JmolScriptEditorInterface
org.jmol.api.
JmolSelectionListener
org.jmol.util.
LoggerInterface
org.jmol.api.
MepCalculationInterface
org.jmol.api.
MinimizerInterface
org.jmol.api.
MOCalculationInterface
org.jmol.api.
SmilesMatcherInterface
org.openscience.jmol.app.
SplashInterface
org.jmol.api.
SymmetryInterface
org.jmol.api.
TriangleServer
org.jmol.jvxl.api.
VertexDataServer
org.jmol.jvxl.api.
MeshDataServer
org.jmol.api.
VolumeDataInterface
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