makeOrgPackageFromNCBI {AnnotationDbi} | R Documentation |
The makeOrgPackageFromNCBI
function allows the user to make an
organism package from NCBI annotations available from the NCBI.
makeOrgPackageFromNCBI( version=, maintainer, author, outputDir=".", tax_id, genus, species)
version |
What is the version number for this package? |
maintainer |
Who is the package maintainer? (must include email to be valid) |
author |
Who is the creator of this package? |
outputDir |
A path where the package source should be assembled. |
tax_id |
The Taxonomy ID that represents your organism. (NCBI has a nice online browser for finding the one you need) |
genus |
Single string indicating the genus. |
species |
Single string indicating the species. |
Nothing returned to the R session. Just creates an organism annotation package.
M. Carlson
## Not run: ## Makes an organism package for Zebra Finch from NCBI: makeOrgPackageFromNCBI(version = "0.1", author = "Some One <so@someplace.org>", maintainer = "Some One <so@someplace.org>", outputDir = ".", tax_id = "59729", genus = "Taeniopygia", species = "guttata") ## End(Not run)