Generic functions for Bioconductor


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Documentation for package ‘BiocGenerics’ version 0.6.0

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BiocGenerics-package Generic functions for Bioconductor
annotation Accessing annotation information
annotation<- Accessing annotation information
anyDuplicated Determine duplicate elements
as.data.frame Coerce to a data frame
AsIs-class S3 classes as S4 classes
BiocGenerics Generic functions for Bioconductor
boxplot Box plots
bzfile-class S3 classes as S4 classes
cbind Combine R objects by rows or columns
characterORconnection-class S3 classes as S4 classes
clusterApply Apply operations using clusters
clusterApplyLB Apply operations using clusters
clusterCall Apply operations using clusters
clusterEvalQ Apply operations using clusters
clusterExport Apply operations using clusters
clusterMap Apply operations using clusters
clusterSplit Apply operations using clusters
colnames Row and column names
combine Combining or merging different Bioconductor data structures
combine-method Combining or merging different Bioconductor data structures
connection-class S3 classes as S4 classes
density Kernel density estimation
duplicated Determine duplicate elements
eval Evaluate an (unevaluated) expression
Extremes Maxima and minima
fifo-class S3 classes as S4 classes
file-class S3 classes as S4 classes
Filter Common higher-order functions in functional programming languages
Find Common higher-order functions in functional programming languages
funprog Common higher-order functions in functional programming languages
get Return the value of a named object
getObjectSlots Update an object to its current class definition
gzcon-class S3 classes as S4 classes
gzfile-class S3 classes as S4 classes
image Display a color image
intersect Set operations
lapply Apply a function over a list-like or vector-like R object
Map Common higher-order functions in functional programming languages
mapply Apply a function to multiple list-like or vector-like arguments
match Value matching
mget Return the value of a named object
NCOL The number of rows/columns of an array-like object
ncol The number of rows/columns of an array-like object
NROW The number of rows/columns of an array-like object
nrow The number of rows/columns of an array-like object
order Ordering permutation
parApply Apply operations using clusters
parCapply Apply operations using clusters
parLapply Apply operations using clusters
parLapplyLB Apply operations using clusters
parRapply Apply operations using clusters
parSapply Apply operations using clusters
parSapplyLB Apply operations using clusters
paste Concatenate strings
pipe-class S3 classes as S4 classes
pmax Maxima and minima
pmax.int Maxima and minima
pmin Maxima and minima
pmin.int Maxima and minima
Position Common higher-order functions in functional programming languages
rank Ranks the values in a vector-like object
rbind Combine R objects by rows or columns
Reduce Common higher-order functions in functional programming languages
rep.int Replicate elements of a vector-like R object
residuals Extract model residuals
row+colnames Row and column names
rownames Row and column names
S3-classes-as-S4-classes S3 classes as S4 classes
sapply Apply a function over a list-like or vector-like R object
setdiff Set operations
sets Set operations
sockconn-class S3 classes as S4 classes
sort Sorting a vector-like object
strand Accessing strand information
strand<- Accessing strand information
table Cross tabulation and table creation
tapply Apply a function over a ragged array
terminal-class S3 classes as S4 classes
textConnection-class S3 classes as S4 classes
union Set operations
unique Extract unique elements
unlist Flatten list-like objects
unz-class S3 classes as S4 classes
updateObject Update an object to its current class definition
updateObject-method Update an object to its current class definition
updateObjectFromSlots Update an object to its current class definition
url-class S3 classes as S4 classes
weights Extract model weights
xtabs Cross tabulation