aaMap |
Dataset: Names and Characteristics of Amino Acids |
abstract |
Retrieve feature and sample names from eSets and exprSets. |
abstract,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
abstract,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
abstract,MIAME-method |
Class for Storing Microarray Experiment Information |
addVigs2WinMenu |
Add Menu Items to an Existing/New Menu of Window |
aggenv,aggregator-method |
A Simple Class for Aggregators |
aggfun,aggregator-method |
A Simple Class for Aggregators |
Aggregate |
A Simple Aggregation Mechanism. |
aggregator |
A Simple Class for Aggregators |
aggregator-class |
A Simple Class for Aggregators |
AnnotatedDataFrame |
Class Containing Measured Variables and Their Meta-Data Description. |
AnnotatedDataFrame-class |
Class Containing Measured Variables and Their Meta-Data Description. |
annotatedDataFrameFrom |
Methods for Function annotatedDataFrameFrom in Package ‘Biobase’ |
annotatedDataFrameFrom,AssayData-method |
Methods for Function annotatedDataFrameFrom in Package ‘Biobase’ |
annotatedDataFrameFrom,matrix-method |
Methods for Function annotatedDataFrameFrom in Package ‘Biobase’ |
annotatedDataFrameFrom,NULL-method |
Methods for Function annotatedDataFrameFrom in Package ‘Biobase’ |
annotatedDataset |
Virtual superset for 'exprSet'. |
annotatedDataset-class |
Virtual superset for 'exprSet'. |
annotation |
Annotate eSet data. |
annotation,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
annotation,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
annotation<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
annotation<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
anyMissing |
Checks if there are any missing values in an object or not |
as.data.frame.ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
as.data.frame.exprSet |
Class for Microarray Data and Methods for Processing Them |
as.data.frame.exprSet,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
AssayData |
Class "AssayData" |
assayData |
Retrieve assay data from eSets and exprSets. |
assayData,AssayData-method |
Class "AssayData" |
assayData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
assayData,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
AssayData-class |
Class "AssayData" |
assayData<-,eSet,AssayData-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
assayDataElement |
Class to Contain High-Throughput Assays and Experimental Metadata |
assayDataElementNames |
Class to Contain High-Throughput Assays and Experimental Metadata |
assayDataElementReplace |
Class to Contain High-Throughput Assays and Experimental Metadata |
assayDataNew |
Class "AssayData" |
assayDataValidMembers |
Class "AssayData" |
cache |
Evaluate an expression if its value is not already cached. |
channel |
Create a new ExpressionSet instance by selecting a specific channel |
channel,NChannelSet,character-method |
Class to contain data from multiple channel array technologies |
channelNames |
Retrieve channel names from object |
channelNames,NChannelSet-method |
Class to contain data from multiple channel array technologies |
characterORMIAME-class |
Class to Make Older Versions Compatible |
class.NChannelSet |
Class to contain data from multiple channel array technologies |
class:aggregator |
A Simple Class for Aggregators |
class:AnnotatedDataFrame |
Class Containing Measured Variables and Their Meta-Data Description. |
class:annotatedDataset |
Virtual superset for 'exprSet'. |
class:characterORMIAME |
Class to Make Older Versions Compatible |
class:container |
A Lockable List Structure with Constraints on Content |
class:eSet |
Class to Contain High-Throughput Assays and Experimental Metadata |
class:ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
class:exprList |
Class Union of a List and an Environment |
class:exprMatrix |
Class Union for Objects Behaving Like a Matrix |
class:exprSet |
Class for Microarray Data and Methods for Processing Them |
class:MIAME |
Class for Storing Microarray Experiment Information |
class:MultiSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
class:phenoData |
Class For Patient or Experiment Level Data |
class:SnpSet |
Class to Contain Objects Describing High-Throughput SNP Assays. |
classVersion |
Retrieve information about versioned classes |
classVersion,ANY-method |
Retrieve information about versioned classes |
classVersion,character-method |
Retrieve information about versioned classes |
classVersion,Versioned-method |
Class "Versioned" |
classVersion<-,Versioned,Versions-method |
Class "Versioned" |
coerce,data.frame,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
coerce,data.frame,phenoData-method |
Class For Patient or Experiment Level Data |
coerce,eSet,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
coerce,eSet,MultiSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
coerce,ExpressionSet,data.frame-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
coerce,exprSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
coerce,exprSet,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
coerce,phenoData,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
coerce,Versions,character-method |
Class "Versions" |
combine |
Methods for Function combine in Package ‘Biobase’ |
combine,AnnotatedDataFrame,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
combine,AssayData,AssayData-method |
Class "AssayData" |
combine,data.frame,data.frame-method |
Methods for Function combine in Package ‘Biobase’ |
combine,eSet,ANY-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
combine,eSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
combine,MIAME,MIAME-method |
Class for Storing Microarray Experiment Information |
combine,phenoData,ANY-method |
Class For Patient or Experiment Level Data |
combine,phenoData,phenoData-method |
Class For Patient or Experiment Level Data |
Compare,character,Versions-method |
Class "Versions" |
Compare,Versions,character-method |
Class "Versions" |
Compare,Versions,Versions-method |
Class "Versions" |
container |
A Lockable List Structure with Constraints on Content |
container-class |
A Lockable List Structure with Constraints on Content |
content,container-method |
A Lockable List Structure with Constraints on Content |
contents |
Function to retrieve contents of environments |
convertVarLabels,phenoData-method |
Class For Patient or Experiment Level Data |
copyEnv |
List-Environment interactions |
copySubstitute |
Copy Between Connections or Files with Configure-Like Name-Value Substitution |
createPackage |
Create a Package Directory from a Template |
data:aaMap |
Dataset: Names and Characteristics of Amino Acids |
data:eset |
(Deprecated) dataset of class 'exprSet' |
data:geneData |
Sample expression matrix and phenotype data.frames. |
data:sample.eSet |
(Deprecated) dataset of class 'eSet' |
data:sample.ExpressionSet |
Dataset of class 'ExpressionSet' |
data:sample.exprSet |
Dataset of class 'exprSet' |
data:sample.exprSet.1 |
Dataset of class 'exprSet' |
description |
Retrieve and set overall experimental information eSet-like classes. |
description,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
description,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
description<-,eSet,MIAME-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
description<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
dim,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
dim,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
dimLabels |
Class Containing Measured Variables and Their Meta-Data Description. |
dimLabels,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
dimLabels<-,AnnotatedDataFrame,character-method |
Class Containing Measured Variables and Their Meta-Data Description. |
dims |
Retrieve dimensions of all elements in a list or environment |
dims,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
dumpPackTxt |
Dump Textual Description of a Package |
esApply |
An apply-like function for ExpressionSet and related structures. |
esApply,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
esApply,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
eSet |
Class to Contain High-Throughput Assays and Experimental Metadata |
eset |
(Deprecated) dataset of class 'exprSet' |
eSet-class |
Class to Contain High-Throughput Assays and Experimental Metadata |
experimentData |
Retrieve feature and sample names from eSets and exprSets. |
experimentData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
experimentData<-,eSet,MIAME-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
expinfo,MIAME-method |
Class for Storing Microarray Experiment Information |
ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
ExpressionSet-class |
Class to Contain and Describe High-Throughput Expression Level Assays. |
exprMatrix-class |
Class Union for Objects Behaving Like a Matrix |
exprs |
Retrieve expression data from eSets. |
exprs,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
exprs,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
exprs,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
exprs,SnpSet-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
exprs2excel |
Class for Microarray Data and Methods for Processing Them |
exprs2excel,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
exprs<-,eSet,AssayData-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
exprs<-,ExpressionSet,matrix-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
exprs<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
exprs<-,SnpSet,matrix-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
exprSet |
Class for Microarray Data and Methods for Processing Them |
exprSet-class |
Class for Microarray Data and Methods for Processing Them |
fData |
Retrieve information on features recorded in eSet-derived classes. |
fData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
fData<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
featureData |
Retrieve information on features recorded in eSet-derived classes. |
featureData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
featureData<-,eSet,AnnotatedDataFrame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
featureNames |
Retrieve feature and sample names from eSets and exprSets. |
featureNames,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
featureNames,AssayData-method |
Class "AssayData" |
featureNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
featureNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
featureNames<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
featureNames<-,AssayData-method |
Class "AssayData" |
featureNames<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
featureNames<-,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
fvarLabels |
Retrieve information on features recorded in eSet-derived classes. |
fvarLabels,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
fvarLabels<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
fvarMetadata |
Retrieve information on features recorded in eSet-derived classes. |
fvarMetadata,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
fvarMetadata<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
geneCovariate |
Sample expression matrix and phenotype data.frames. |
geneData |
Sample expression matrix and phenotype data.frames. |
geneNames |
Retrieve feature and sample names from eSets and exprSets. |
geneNames,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
geneNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
geneNames<-,ExpressionSet,character-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
geneNames<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
getExpData,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
getObjectSlots |
Update an object to its current class definition |
getPkgVigs |
List Vignette Files for a Package |
getVarMetadata |
Class For Patient or Experiment Level Data |
getVarMetadata,phenoData,character,character-method |
Class For Patient or Experiment Level Data |
getVarMetadata,phenoData,character,missing-method |
Class For Patient or Experiment Level Data |
golubMergeSub |
Class to Contain High-Throughput Assays and Experimental Metadata |
initfun,aggregator-method |
A Simple Class for Aggregators |
initialize,aggregator-method |
A Simple Class for Aggregators |
initialize,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
initialize,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
initialize,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
initialize,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
initialize,MultiSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
initialize,NChannelSet-method |
Class to contain data from multiple channel array technologies |
initialize,phenoData-method |
Class For Patient or Experiment Level Data |
initialize,SnpSet-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
initialize,Versioned-method |
Class "Versioned" |
initialize,Versions-method |
Class "Versions" |
initialize,VersionsNull-method |
Class "VersionsNull" |
intitialize,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
isCurrent |
Use version information to test whether class is current |
isCurrent,ANY,ANY-method |
Use version information to test whether class is current |
isCurrent,MIAME,missing-method |
Class for Storing Microarray Experiment Information |
isCurrent,Versioned,character-method |
Class "Versioned" |
isCurrent,Versioned,missing-method |
Class "Versioned" |
isUnique |
Determine Unique Elements |
isVersioned |
Determine whether object or class contains versioning information |
isVersioned,ANY-method |
Determine whether object or class contains versioning information |
isVersioned,character-method |
Determine whether object or class contains versioning information |
isVersioned,Versioned-method |
Class "Versioned" |
iter,exprSet,character,function-method |
Class for Microarray Data and Methods for Processing Them |
iter,exprSet,missing,function-method |
Class for Microarray Data and Methods for Processing Them |
iter,exprSet,missing,list-method |
Class for Microarray Data and Methods for Processing Them |
NChannelSet |
Class to contain data from multiple channel array technologies |
NChannelSet-class |
Class to contain data from multiple channel array technologies |
ncol,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
ncol,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
normControls,MIAME-method |
Class for Storing Microarray Experiment Information |
note |
Informational Messages |
notes |
Retrieve and set eSet and exprSet notes. |
notes,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
notes,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
notes,MIAME-method |
Class for Storing Microarray Experiment Information |
notes<-,eSet,ANY-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
notes<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
notes<-,MIAME,character-method |
Class for Storing Microarray Experiment Information |
notes<-,MIAME,list-method |
Class for Storing Microarray Experiment Information |
package.version |
Report Version of a Package |
pData |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
pData,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
pData,annotatedDataset-method |
Virtual superset for 'exprSet'. |
pData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
pData,phenoData-method |
Class For Patient or Experiment Level Data |
pData<-,AnnotatedDataFrame,data.frame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
pData<-,annotatedDataset,ANY-method |
Virtual superset for 'exprSet'. |
pData<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
pData<-,phenoData,ANY-method |
Class For Patient or Experiment Level Data |
phenoData |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
phenoData,annotatedDataset-method |
Virtual superset for 'exprSet'. |
phenoData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
phenoData-class |
Class For Patient or Experiment Level Data |
phenoData<-,annotatedDataset,phenoData-method |
Class For Patient or Experiment Level Data |
phenoData<-,eSet,AnnotatedDataFrame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
preproc |
Class for Storing Microarray Experiment Information |
preproc,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
preproc,MIAME-method |
Class for Storing Microarray Experiment Information |
preproc<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
preproc<-,MIAME-method |
Class for Storing Microarray Experiment Information |
pubMedIds |
Retrieve feature and sample names from eSets and exprSets. |
pubMedIds,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
pubMedIds,MIAME-method |
Class for Storing Microarray Experiment Information |
pubMedIds<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
pubMedIds<-,MIAME,ANY-method |
Class for Storing Microarray Experiment Information |
read.AnnotatedDataFrame |
Read 'AnnotatedDataFrame' |
read.exprSet |
Read Experimental Data and into an 'exprSet' Object |
read.MIAME |
Read MIAME Information into an Instance of Class 'MIAME' |
read.phenoData |
Read 'phenoData' |
readExpressionSet |
Read 'ExpressionSet' |
reporter |
Example Data Frame Object for the ReporterInfo Slot |
reporterInfo |
Retrieve and set information about reporters. |
reporterInfo,annotatedDataset-method |
Virtual superset for 'exprSet'. |
reporterInfo<-,annotatedDataset,data.frame-method |
Virtual superset for 'exprSet'. |
reporterNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
reverseSplit |
A function to reverse the role of names and values in a list. |
rowMax |
A function to compute empirical row quantiles. |
rowMedians |
Calculates the median for each row in a matrix |
rowMedians,ExpressionSet-method |
Calculates the median for each row in a matrix |
rowMedians,exprSet-method |
Calculates the median for each row in a matrix |
rowMedians,matrix-method |
Calculates the median for each row in a matrix |
rowMin |
A function to compute empirical row quantiles. |
rowQ |
A function to compute empirical row quantiles. |
rowQ,ExpressionSet,numeric-method |
A function to compute empirical row quantiles. |
rowQ,exprSet,numeric-method |
A function to compute empirical row quantiles. |
rowQ,matrix,numeric-method |
A function to compute empirical row quantiles. |
sample.eSet |
(Deprecated) dataset of class 'eSet' |
sample.ExpressionSet |
Dataset of class 'ExpressionSet' |
sample.exprSet |
Dataset of class 'exprSet' |
sample.exprSet.1 |
Dataset of class 'exprSet' |
sampleNames |
Retrieve feature and sample names from eSets and exprSets. |
sampleNames,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
sampleNames,AssayData-method |
Class "AssayData" |
sampleNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
sampleNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
sampleNames,NChannelSet-method |
Class to contain data from multiple channel array technologies |
sampleNames<-,AnnotatedDataFrame,ANY-method |
Class Containing Measured Variables and Their Meta-Data Description. |
sampleNames<-,AssayData,ANY-method |
Class "AssayData" |
sampleNames<-,AssayData,list-method |
Class "AssayData" |
sampleNames<-,eSet,ANY-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
sampleNames<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
sampleNames<-,NChannelSet,list-method |
Class to contain data from multiple channel array technologies |
samples |
Class for Storing Microarray Experiment Information |
samples,MIAME-method |
Class for Storing Microarray Experiment Information |
ScalarCharacter-class |
Utility classes for length one (scalar) objects |
ScalarInteger-class |
Utility classes for length one (scalar) objects |
ScalarNumeric-class |
Utility classes for length one (scalar) objects |
ScalarObject-class |
Utility classes for length one (scalar) objects |
se.exprs |
Retrieve expression data from eSets. |
se.exprs,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
se.exprs<-,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
seD |
Sample expression matrix and phenotype data.frames. |
selectChannels |
Create a new NChannelSet instance by selecting specific channels |
selectChannels,NChannelSet,character-method |
Class to contain data from multiple channel array technologies |
selectSome |
extract aspects of a vector for concise rendering |
show,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
show,container-method |
A Lockable List Structure with Constraints on Content |
show,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
show,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
show,MIAME-method |
Class for Storing Microarray Experiment Information |
show,phenoData-method |
Class For Patient or Experiment Level Data |
show,ScalarCharacter-method |
Utility classes for length one (scalar) objects |
show,ScalarObject-method |
Utility classes for length one (scalar) objects |
show,Versioned-method |
Class "Versioned" |
show,Versions-method |
Class "Versions" |
show,VersionsNull-method |
Class "VersionsNull" |
SnpSet |
Class to Contain Objects Describing High-Throughput SNP Assays. |
SnpSet-class |
Class to Contain Objects Describing High-Throughput SNP Assays. |
split |
Class for Microarray Data and Methods for Processing Them |
split,exprSet,factor,missing-method |
Class for Microarray Data and Methods for Processing Them |
split,exprSet,vector,missing-method |
Class for Microarray Data and Methods for Processing Them |
split,phenoData,vector,missing-method |
Class For Patient or Experiment Level Data |
storageMode |
Retrieve or set storage mode for eSets. |
storageMode,AssayData-method |
Class "AssayData" |
storageMode,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
storageMode<-,AssayData,character-method |
Class "AssayData" |
storageMode<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
strbreak |
Break Character Strings to Fit Width |
subListExtract |
Extract the same element from the sublists of a list |
SW |
Class to Contain High-Throughput Assays and Experimental Metadata |
SWPD |
Class to Contain High-Throughput Assays and Experimental Metadata |
swrep |
Class to Contain High-Throughput Assays and Experimental Metadata |
update2MIAME |
Class for Microarray Data and Methods for Processing Them |
update2MIAME,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
updateObject |
Update an object to its current class definition |
updateObject,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
updateObject,ANY-method |
Update an object to its current class definition |
updateObject,environment-method |
Update an object to its current class definition |
updateObject,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
updateObject,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
updateObject,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
updateObject,list-method |
Update an object to its current class definition |
updateObject,MIAME-method |
Class for Storing Microarray Experiment Information |
updateObject,phenoData-method |
Class For Patient or Experiment Level Data |
updateObject,Versions-method |
Class "Versions" |
updateObjectFromSlots |
Update an object to its current class definition |
updateObjectTo |
Update an object to its current class definition |
updateObjectTo,ANY,ANY-method |
Update an object to its current class definition |
updateObjectTo,eSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
updateOldESet |
Update previously created eSet object to current eSet structure |
userQuery |
A function to query the user for input |
varLabels |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
varLabels,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
varLabels,annotatedDataset-method |
Virtual superset for 'exprSet'. |
varLabels,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
varLabels,phenoData-method |
Class For Patient or Experiment Level Data |
varLabels<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
varLabels<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
varMetadata |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
varMetadata,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
varMetadata,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
varMetadata,phenoData-method |
Class For Patient or Experiment Level Data |
varMetadata<-,AnnotatedDataFrame,data.frame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
varMetadata<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
Versioned |
Class "Versioned" |
Versioned-class |
Class "Versioned" |
VersionedBiobase |
Class "VersionedBiobase" |
VersionedBiobase-class |
Class "VersionedBiobase" |
Versions |
Class "Versions" |
Versions-class |
Class "Versions" |
VersionsNull |
Class "VersionsNull" |
VersionsNull-class |
Class "VersionsNull" |
[,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
[,container-method |
A Lockable List Structure with Constraints on Content |
[,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
[,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
[,phenoData-method |
Class For Patient or Experiment Level Data |
[,Versions-method |
Class "Versions" |
[<-,Versions-method |
Class "Versions" |
[[,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
[[,annotatedDataset-method |
Virtual superset for 'exprSet'. |
[[,container-method |
A Lockable List Structure with Constraints on Content |
[[,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
[[,phenoData-method |
Class For Patient or Experiment Level Data |
[[<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
[[<-,annotatedDataset-method |
Virtual superset for 'exprSet'. |
[[<-,container-method |
A Lockable List Structure with Constraints on Content |
[[<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
[[<-,phenoData-method |
Class For Patient or Experiment Level Data |
[[<-,Versions-method |
Class "Versions" |